RNA–Protein interactions for RNA: ENST00000604689.1

TUBE1-207, Transcript of tubulin epsilon 1, humanhuman

Gene TUBE1, Length 3,610 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-207ENST00000604689 CHIC1Q5VXU3 224 aa15□□□□□ -0.01
TUBE1-207ENST00000604689 AEBP2Q6ZN18 517 aaPredicted RBP14.45□□□□□ -0.1
TUBE1-207ENST00000604689 EHMT2Q96KQ7 1210 aa14.28□□□□□ -0.12
TUBE1-207ENST00000604689 SLC24A1O60721 1099 aa14.26□□□□□ -0.13
TUBE1-207ENST00000604689 PHF23Q9BUL5 403 aaPredicted RBP13.67□□□□□ -0.22
TUBE1-207ENST00000604689 PLPPR3Q6T4P5 718 aa13.64□□□□□ -0.23
TUBE1-207ENST00000604689 RTN4Q9NQC3 1192 aaKnown RBP13.35□□□□□ -0.27
TUBE1-207ENST00000604689 KCNA4P22459 653 aa13.14□□□□□ -0.31
TUBE1-207ENST00000604689 CSRNP3Q8WYN3 585 aa13.08□□□□□ -0.32
TUBE1-207ENST00000604689 PRKCSHP14314 528 aaPredicted RBP12.77□□□□□ -0.36
TUBE1-207ENST00000604689 MYT1Q01538 1121 aa12.76□□□□□ -0.37
TUBE1-207ENST00000604689 PELP1Q8IZL8 1130 aaKnown RBP12.74□□□□□ -0.37
TUBE1-207ENST00000604689 NISCHQ9Y2I1 1504 aa12.73□□□□□ -0.37
TUBE1-207ENST00000604689 AMER1Q5JTC6 1135 aaPredicted RBP12.72□□□□□ -0.37
TUBE1-207ENST00000604689 NCBP3Q53F19 620 aaKnown RBP12.57□□□□□ -0.4
TUBE1-207ENST00000604689 SLC4A1APQ9BWU0 796 aaKnown RBP12.53□□□□□ -0.4
TUBE1-207ENST00000604689 ADRA2BP18089 450 aa12.51□□□□□ -0.41
TUBE1-207ENST00000604689 CCDC180Q9P1Z9 1646 aa12.46□□□□□ -0.42
TUBE1-207ENST00000604689 DAXXQ9UER7 740 aaPredicted RBP12.44□□□□□ -0.42
TUBE1-207ENST00000604689 ERICH6Q7L0X2 663 aa12.33□□□□□ -0.44
TUBE1-207ENST00000604689 TTBK1Q5TCY1 1321 aaPredicted RBP12.29□□□□□ -0.44
TUBE1-207ENST00000604689 TIMELESSQ9UNS1 1208 aa12.22□□□□□ -0.45
TUBE1-207ENST00000604689 ZBTB22O15209 634 aa12.17□□□□□ -0.46
TUBE1-207ENST00000604689 TULP1O00294 542 aaPredicted RBP12.12□□□□□ -0.47
TUBE1-207ENST00000604689 TAOK2Q9UL54 1235 aa12.11□□□□□ -0.47
TUBE1-207ENST00000604689 TPRNQ4KMQ1 711 aa12.07□□□□□ -0.48
TUBE1-207ENST00000604689 HAP1P54257 671 aaPredicted RBP11.94□□□□□ -0.5
TUBE1-207ENST00000604689 APLP2Q06481 763 aa11.93□□□□□ -0.5
TUBE1-207ENST00000604689 BCANQ96GW7 911 aa11.9□□□□□ -0.51
TUBE1-207ENST00000604689 PLCB2Q00722 1185 aa11.86□□□□□ -0.51
TUBE1-207ENST00000604689 FKBP8Q14318 412 aa11.84□□□□□ -0.51
TUBE1-207ENST00000604689 PPP6R1Q9UPN7 881 aa11.83□□□□□ -0.52
TUBE1-207ENST00000604689 EIF5BO60841 1220 aaKnown RBP11.82□□□□□ -0.52
TUBE1-207ENST00000604689 ARXQ96QS3 562 aa11.82□□□□□ -0.52
TUBE1-207ENST00000604689 MYO15BQ96JP2 1530 aa11.81□□□□□ -0.52
TUBE1-207ENST00000604689 NPM3O75607 178 aaKnown RBP11.79□□□□□ -0.52
TUBE1-207ENST00000604689 BCL11AQ9H165 835 aa11.72□□□□□ -0.53
TUBE1-207ENST00000604689 DCAF8L2P0C7V8 631 aa11.67□□□□□ -0.54
TUBE1-207ENST00000604689 PODXL2Q9NZ53 605 aa11.64□□□□□ -0.55
TUBE1-207ENST00000604689 HOMEZQ8IX15 550 aa11.61□□□□□ -0.55
TUBE1-207ENST00000604689 GTF3C3Q9Y5Q9 886 aa11.6□□□□□ -0.55
TUBE1-207ENST00000604689 PLEKHG5O94827 1062 aa11.59□□□□□ -0.55
TUBE1-207ENST00000604689 RANGAP1P46060 587 aaPredicted RBP11.59□□□□□ -0.55
TUBE1-207ENST00000604689 DCAF1Q9Y4B6 1507 aa11.58□□□□□ -0.56
TUBE1-207ENST00000604689 KLHL34Q8N239 644 aa11.58□□□□□ -0.56
TUBE1-207ENST00000604689 PPP4R3CPQ6ZMV5 832 aa11.56□□□□□ -0.56
TUBE1-207ENST00000604689 SENP3Q9H4L4 574 aaPredicted RBP11.56□□□□□ -0.56
TUBE1-207ENST00000604689 FBLN2P98095 1184 aa11.53□□□□□ -0.56
TUBE1-207ENST00000604689 KDM2AQ9Y2K7 1162 aa11.49□□□□□ -0.57
TUBE1-207ENST00000604689 FAM9AQ8IZU1 332 aaPredicted RBP11.44□□□□□ -0.58
TUBE1-207ENST00000604689 SUPT5HO00267 1087 aaKnown RBP11.4□□□□□ -0.58
TUBE1-207ENST00000604689 SHROOM4Q9ULL8 1493 aa11.39□□□□□ -0.59
TUBE1-207ENST00000604689 C14orf37Q86TY3 774 aa11.36□□□□□ -0.59
TUBE1-207ENST00000604689 FOXD4L1Q9NU39 408 aa11.32□□□□□ -0.6
TUBE1-207ENST00000604689 PPARGC1BQ86YN6 1023 aaKnown RBP11.31□□□□□ -0.6
TUBE1-207ENST00000604689 TMEM132AQ24JP5 1023 aa11.3□□□□□ -0.6
TUBE1-207ENST00000604689 UNC13AQ9UPW8 1703 aa11.29□□□□□ -0.6
TUBE1-207ENST00000604689 VSIG10Q8N0Z9 540 aa11.29□□□□□ -0.6
TUBE1-207ENST00000604689 NPM2Q86SE8 214 aaKnown RBP11.21□□□□□ -0.61
TUBE1-207ENST00000604689 HRCP23327 699 aa11.18□□□□□ -0.62
TUBE1-207ENST00000604689 CFAP44Q96MT7 982 aa11.17□□□□□ -0.62
TUBE1-207ENST00000604689 TRIM26Q12899 539 aaPredicted RBP11.17□□□□□ -0.62
TUBE1-207ENST00000604689 UBTFP17480 764 aaKnown RBP11.15□□□□□ -0.62
TUBE1-207ENST00000604689 PAXIP1Q6ZW49 1069 aaPredicted RBP11.11□□□□□ -0.63
TUBE1-207ENST00000604689 PCGF6Q9BYE7 350 aa11.09□□□□□ -0.63
TUBE1-207ENST00000604689 CENPBP07199 599 aaPredicted RBP11.05□□□□□ -0.64
TUBE1-207ENST00000604689 TSHZ2Q9NRE2 1034 aa11.04□□□□□ -0.64
TUBE1-207ENST00000604689 NACADO15069 1562 aa11.01□□□□□ -0.65
TUBE1-207ENST00000604689 NBR1Q14596 966 aa10.97□□□□□ -0.65
TUBE1-207ENST00000604689 FOXD1Q16676 465 aa10.93□□□□□ -0.66
TUBE1-207ENST00000604689 NPM1P06748 294 aaKnown RBP eCLIP10.91□□□□□ -0.66
TUBE1-207ENST00000604689 ZCCHC6Q5VYS8 1495 aaKnown RBP10.91□□□□□ -0.66
TUBE1-207ENST00000604689 SCAF1Q9H7N4 1312 aaKnown RBP10.9□□□□□ -0.66
TUBE1-207ENST00000604689 PDIA4P13667 645 aaKnown RBP10.89□□□□□ -0.67
TUBE1-207ENST00000604689 ARID3AQ99856 593 aa10.88□□□□□ -0.67
TUBE1-207ENST00000604689 PKNOX2Q96KN3 472 aa10.87□□□□□ -0.67
TUBE1-207ENST00000604689 PKD2Q13563 968 aa10.86□□□□□ -0.67
TUBE1-207ENST00000604689 ANO8Q9HCE9 1232 aaPredicted RBP10.86□□□□□ -0.67
TUBE1-207ENST00000604689 LOC105371045A0A1W2PR82 267 aa10.85□□□□□ -0.67
TUBE1-207ENST00000604689 PDE4CQ08493 712 aa10.85□□□□□ -0.67
TUBE1-207ENST00000604689 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.85□□□□□ -0.67
TUBE1-207ENST00000604689 TRHP20396 242 aaPredicted RBP10.84□□□□□ -0.67
TUBE1-207ENST00000604689 BICRAQ9NZM4 1560 aa10.79□□□□□ -0.68
TUBE1-207ENST00000604689 NEFLP07196 543 aa10.78□□□□□ -0.68
TUBE1-207ENST00000604689 PEG3Q9GZU2 1588 aa10.77□□□□□ -0.69
TUBE1-207ENST00000604689 DHX37Q8IY37 1157 aaKnown RBP10.76□□□□□ -0.69
TUBE1-207ENST00000604689 A0A0U1RQG5 324 aaPredicted RBP10.75□□□□□ -0.69
TUBE1-207ENST00000604689 UBE2Q2Q8WVN8 375 aa10.75□□□□□ -0.69
TUBE1-207ENST00000604689 IFNLR1Q8IU57 520 aaPredicted RBP10.74□□□□□ -0.69
TUBE1-207ENST00000604689 CCDC136Q96JN2 1154 aa10.71□□□□□ -0.69
TUBE1-207ENST00000604689 CNKSR2Q8WXI2 1034 aa10.71□□□□□ -0.7
TUBE1-207ENST00000604689 FBXO3Q9UK99 471 aa10.71□□□□□ -0.7
TUBE1-207ENST00000604689 RB1CC1Q8TDY2 1594 aa10.7□□□□□ -0.7
TUBE1-207ENST00000604689 PIAS4Q8N2W9 510 aaPredicted RBP10.69□□□□□ -0.7
TUBE1-207ENST00000604689 PRDM2Q13029 1718 aa10.68□□□□□ -0.7
TUBE1-207ENST00000604689 BBXQ8WY36 941 aaPredicted RBP10.67□□□□□ -0.7
TUBE1-207ENST00000604689 BCL11BQ9C0K0 894 aaPredicted RBP10.66□□□□□ -0.7
TUBE1-207ENST00000604689 SPRYD3Q8NCJ5 442 aa10.66□□□□□ -0.7
TUBE1-207ENST00000604689 POLR3GLQ9BT43 218 aa10.64□□□□□ -0.71
TUBE1-207ENST00000604689 CHMP4AQ9BY43 222 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms