Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
PCDHA1Q9Y5I3 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.67■■■□□ 2.34
PCDHA1Q9Y5I3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
PCDHA1Q9Y5I3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
PCDHA1Q9Y5I3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.65■■■□□ 2.34
PCDHA1Q9Y5I3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
PCDHA1Q9Y5I3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.65■■■□□ 2.34
PCDHA1Q9Y5I3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.65■■■□□ 2.34
PCDHA1Q9Y5I3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
PCDHA1Q9Y5I3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.62■■■□□ 2.33
PCDHA1Q9Y5I3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
PCDHA1Q9Y5I3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PCDHA1Q9Y5I3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC29.61■■■□□ 2.33
PCDHA1Q9Y5I3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
PCDHA1Q9Y5I3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
PCDHA1Q9Y5I3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC29.6■■■□□ 2.33
PCDHA1Q9Y5I3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.6■■■□□ 2.33
PCDHA1Q9Y5I3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC29.59■■■□□ 2.33
PCDHA1Q9Y5I3 MIR4449-201ENST00000578365 66 ntBASIC29.59■■■□□ 2.33
PCDHA1Q9Y5I3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
PCDHA1Q9Y5I3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
PCDHA1Q9Y5I3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
PCDHA1Q9Y5I3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
PCDHA1Q9Y5I3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC29.58■■■□□ 2.33
PCDHA1Q9Y5I3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
PCDHA1Q9Y5I3 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC29.57■■■□□ 2.32
PCDHA1Q9Y5I3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
PCDHA1Q9Y5I3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
PCDHA1Q9Y5I3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
PCDHA1Q9Y5I3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
PCDHA1Q9Y5I3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
PCDHA1Q9Y5I3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC29.56■■■□□ 2.32
PCDHA1Q9Y5I3 AP004833.2-201ENST00000532228 1454 ntBASIC29.55■■■□□ 2.32
PCDHA1Q9Y5I3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
PCDHA1Q9Y5I3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
PCDHA1Q9Y5I3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
PCDHA1Q9Y5I3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC29.55■■■□□ 2.32
PCDHA1Q9Y5I3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
PCDHA1Q9Y5I3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
PCDHA1Q9Y5I3 AL139393.2-201ENST00000608721 2025 ntBASIC29.54■■■□□ 2.32
PCDHA1Q9Y5I3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
PCDHA1Q9Y5I3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.53■■■□□ 2.32
PCDHA1Q9Y5I3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
PCDHA1Q9Y5I3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
PCDHA1Q9Y5I3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
PCDHA1Q9Y5I3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC29.52■■■□□ 2.32
PCDHA1Q9Y5I3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC29.52■■■□□ 2.32
PCDHA1Q9Y5I3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC29.52■■■□□ 2.32
PCDHA1Q9Y5I3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC29.51■■■□□ 2.32
PCDHA1Q9Y5I3 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
PCDHA1Q9Y5I3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
PCDHA1Q9Y5I3 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
PCDHA1Q9Y5I3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
PCDHA1Q9Y5I3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC29.5■■■□□ 2.31
PCDHA1Q9Y5I3 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
PCDHA1Q9Y5I3 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
PCDHA1Q9Y5I3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
PCDHA1Q9Y5I3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
PCDHA1Q9Y5I3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC29.48■■■□□ 2.31
PCDHA1Q9Y5I3 AC110285.7-201ENST00000624417 1536 ntBASIC29.47■■■□□ 2.31
PCDHA1Q9Y5I3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCDHA1Q9Y5I3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCDHA1Q9Y5I3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC29.46■■■□□ 2.31
PCDHA1Q9Y5I3 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.45■■■□□ 2.31
PCDHA1Q9Y5I3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.45■■■□□ 2.3
PCDHA1Q9Y5I3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.3
PCDHA1Q9Y5I3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC29.44■■■□□ 2.3
PCDHA1Q9Y5I3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
PCDHA1Q9Y5I3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
PCDHA1Q9Y5I3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.44■■■□□ 2.3
PCDHA1Q9Y5I3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29.44■■■□□ 2.3
PCDHA1Q9Y5I3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
PCDHA1Q9Y5I3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
PCDHA1Q9Y5I3 AC100797.4-201ENST00000631653 1827 ntBASIC29.42■■■□□ 2.3
PCDHA1Q9Y5I3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
PCDHA1Q9Y5I3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29.41■■■□□ 2.3
PCDHA1Q9Y5I3 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
PCDHA1Q9Y5I3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
PCDHA1Q9Y5I3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC29.4■■■□□ 2.3
PCDHA1Q9Y5I3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.4■■■□□ 2.3
PCDHA1Q9Y5I3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.4■■■□□ 2.3
PCDHA1Q9Y5I3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
PCDHA1Q9Y5I3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
PCDHA1Q9Y5I3 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
PCDHA1Q9Y5I3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.39■■■□□ 2.3
PCDHA1Q9Y5I3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
PCDHA1Q9Y5I3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
PCDHA1Q9Y5I3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.38■■■□□ 2.29
PCDHA1Q9Y5I3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.38■■■□□ 2.29
PCDHA1Q9Y5I3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
PCDHA1Q9Y5I3 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.38■■■□□ 2.29
PCDHA1Q9Y5I3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.37■■■□□ 2.29
PCDHA1Q9Y5I3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.37■■■□□ 2.29
PCDHA1Q9Y5I3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PCDHA1Q9Y5I3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
PCDHA1Q9Y5I3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
PCDHA1Q9Y5I3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.36■■■□□ 2.29
PCDHA1Q9Y5I3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
PCDHA1Q9Y5I3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
PCDHA1Q9Y5I3 ABCB10P3-201ENST00000561950 2166 ntBASIC29.36■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms