RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 NISCHQ9Y2I1 1504 aa62.65■■■■■ 7.62
VEGFA-208ENST00000417285 CCDC180Q9P1Z9 1646 aa55.96■■■■■ 6.55
VEGFA-208ENST00000417285 ABCC9O60706 1549 aa55.67■■■■■ 6.5
VEGFA-208ENST00000417285 RB1CC1Q8TDY2 1594 aa53.18■■■■■ 6.1
VEGFA-208ENST00000417285 NACADO15069 1562 aa52.93■■■■■ 6.06
VEGFA-208ENST00000417285 DCAF8L2P0C7V8 631 aa52.88■■■■■ 6.06
VEGFA-208ENST00000417285 MYO15BQ96JP2 1530 aa52.39■■■■■ 5.98
VEGFA-208ENST00000417285 PABPN1Q86U42 306 aaKnown RBP eCLIP51.99■■■■■ 5.91
VEGFA-208ENST00000417285 DNAJC5BQ9UF47 199 aa51.98■■■■■ 5.91
VEGFA-208ENST00000417285 ZCCHC6Q5VYS8 1495 aaKnown RBP51.95■■■■■ 5.91
VEGFA-208ENST00000417285 DCAF1Q9Y4B6 1507 aa51.82■■■■■ 5.89
VEGFA-208ENST00000417285 UNC13AQ9UPW8 1703 aa51.73■■■■■ 5.87
VEGFA-208ENST00000417285 BICRAQ9NZM4 1560 aa51.53■■■■■ 5.84
VEGFA-208ENST00000417285 SHROOM4Q9ULL8 1493 aa51.03■■■■■ 5.76
VEGFA-208ENST00000417285 SCRIBQ14160 1630 aa50.97■■■■■ 5.75
VEGFA-208ENST00000417285 EIF4G1Q04637 1599 aaKnown RBP50.27■■■■■ 5.64
VEGFA-208ENST00000417285 CC2D2AQ9P2K1 1620 aa50.27■■■■■ 5.64
VEGFA-208ENST00000417285 CECR2Q9BXF3 1484 aa50.16■■■■■ 5.62
VEGFA-208ENST00000417285 NCAPD3P42695 1498 aa48.93■■■■■ 5.42
VEGFA-208ENST00000417285 ATAD2BQ9ULI0 1458 aa48.77■■■■■ 5.4
VEGFA-208ENST00000417285 SMARCA4P51532 1647 aa48.71■■■■■ 5.39
VEGFA-208ENST00000417285 SMARCA2P51531 1590 aa48.66■■■■■ 5.38
VEGFA-208ENST00000417285 BAZ1AQ9NRL2 1556 aaPredicted RBP48.6■■■■■ 5.37
VEGFA-208ENST00000417285 HMGXB3Q12766 1538 aa48.49■■■■■ 5.35
VEGFA-208ENST00000417285 BAZ1BQ9UIG0 1483 aaKnown RBP48.3■■■■■ 5.32
VEGFA-208ENST00000417285 PEG3Q9GZU2 1588 aa48.29■■■■■ 5.32
VEGFA-208ENST00000417285 MROH2BQ7Z745 1585 aa48.22■■■■■ 5.31
VEGFA-208ENST00000417285 ERCC6Q03468 1493 aa48.1■■■■■ 5.29
VEGFA-208ENST00000417285 CUX2O14529 1486 aa47.91■■■■■ 5.26
VEGFA-208ENST00000417285 NESP48681 1621 aa47.89■■■■■ 5.26
VEGFA-208ENST00000417285 LAMC3Q9Y6N6 1575 aa47.67■■■■■ 5.22
VEGFA-208ENST00000417285 WIZO95785 1651 aa47.59■■■■■ 5.21
VEGFA-208ENST00000417285 DNAJC5Q9H3Z4 198 aa47.58■■■■■ 5.21
VEGFA-208ENST00000417285 PDS5BQ9NTI5 1447 aa47.51■■■■■ 5.2
VEGFA-208ENST00000417285 CADPSQ9ULU8 1353 aa47.48■■■■■ 5.19
VEGFA-208ENST00000417285 RSF1Q96T23 1441 aaPredicted RBP47.45■■■■■ 5.19
VEGFA-208ENST00000417285 THOC2Q8NI27 1593 aaKnown RBP47.26■■■■■ 5.16
VEGFA-208ENST00000417285 KIF21AQ7Z4S6 1674 aa47.17■■■■■ 5.14
VEGFA-208ENST00000417285 TOP2AP11388 1531 aaKnown RBP47.09■■■■■ 5.13
VEGFA-208ENST00000417285 MRC2Q9UBG0 1479 aa46.97■■■■■ 5.11
VEGFA-208ENST00000417285 CFTRP13569 1480 aa46.96■■■■■ 5.11
VEGFA-208ENST00000417285 CEP164Q9UPV0 1460 aa46.86■■■■■ 5.09
VEGFA-208ENST00000417285 FANCD2Q9BXW9 1451 aa46.85■■■■■ 5.09
VEGFA-208ENST00000417285 WDR62O43379 1518 aa46.79■■■■■ 5.08
VEGFA-208ENST00000417285 CCDC88BA6NC98 1476 aa46.62■■■■■ 5.05
VEGFA-208ENST00000417285 URB2Q14146 1524 aaKnown RBP46.39■■■■■ 5.02
VEGFA-208ENST00000417285 PRDM2Q13029 1718 aa46.27■■■■■ 5
VEGFA-208ENST00000417285 ABCC8Q09428 1581 aa46.05■■■■■ 4.96
VEGFA-208ENST00000417285 TOPBP1Q92547 1522 aa45.98■■■■■ 4.95
VEGFA-208ENST00000417285 IFT140Q96RY7 1462 aa45.96■■■■■ 4.95
VEGFA-208ENST00000417285 OSCARQ8IYS5 282 aa45.94■■■■■ 4.94
VEGFA-208ENST00000417285 DNMBPQ6XZF7 1577 aa45.82■■■■■ 4.93
VEGFA-208ENST00000417285 ZNF608Q9ULD9 1512 aaPredicted RBP45.76■■■■■ 4.92
VEGFA-208ENST00000417285 SUPT5HO00267 1087 aaKnown RBP45.68■■■■■ 4.9
VEGFA-208ENST00000417285 TRIM41Q8WV44 630 aa45.56■■■■■ 4.88
VEGFA-208ENST00000417285 POLA1P09884 1462 aaPredicted RBP45.53■■■■■ 4.88
VEGFA-208ENST00000417285 TARBP1Q13395 1621 aaKnown RBP45.49■■■■■ 4.87
VEGFA-208ENST00000417285 AQRO60306 1485 aaKnown RBP eCLIP45.46■■■■■ 4.871e-8■■■■■ 26.8
VEGFA-208ENST00000417285 EIF4G3O43432 1585 aaKnown RBP45.44■■■■■ 4.86
VEGFA-208ENST00000417285 SOGA1O94964 1423 aa45.43■■■■■ 4.86
VEGFA-208ENST00000417285 RAD54L2Q9Y4B4 1467 aa45.36■■■■■ 4.85
VEGFA-208ENST00000417285 FGD5Q6ZNL6 1462 aa45.29■■■■■ 4.84
VEGFA-208ENST00000417285 CUX1P39880 1505 aa45.28■■■■■ 4.84
VEGFA-208ENST00000417285 TDRD9Q8NDG6 1382 aaKnown RBP45.27■■■■■ 4.84
VEGFA-208ENST00000417285 FBLN2P98095 1184 aa45.18■■■■■ 4.82
VEGFA-208ENST00000417285 WDR97A6NE52 1622 aa45.12■■■■■ 4.81
VEGFA-208ENST00000417285 RIMBP3CA6NJZ7 1639 aa45.01■■■■■ 4.8
VEGFA-208ENST00000417285 RIMBP3BA6NNM3 1639 aa45.01■■■■■ 4.8
VEGFA-208ENST00000417285 RIMBP3Q9UFD9 1639 aa45.01■■■■■ 4.8
VEGFA-208ENST00000417285 CHD1O14646 1710 aa44.98■■■■■ 4.79
VEGFA-208ENST00000417285 ARHGEF11O15085 1522 aa44.97■■■■■ 4.79
VEGFA-208ENST00000417285 GRIN2BQ13224 1484 aa44.97■■■■■ 4.79
VEGFA-208ENST00000417285 CHMP7Q8WUX9 453 aaPredicted RBP44.95■■■■■ 4.79
VEGFA-208ENST00000417285 SNAPC4Q5SXM2 1469 aa44.94■■■■■ 4.78
VEGFA-208ENST00000417285 MAGI1Q96QZ7 1491 aaPredicted RBP44.91■■■■■ 4.78
VEGFA-208ENST00000417285 GAPVD1Q14C86 1478 aa44.85■■■■■ 4.77
VEGFA-208ENST00000417285 ABCA10Q8WWZ4 1543 aa44.84■■■■■ 4.77
VEGFA-208ENST00000417285 WRNQ14191 1432 aaPredicted RBP eCLIP44.82■■■■■ 4.771e-6■■■■□ 26.4
VEGFA-208ENST00000417285 CYB5RLQ6IPT4 315 aa44.77■■■■■ 4.76
VEGFA-208ENST00000417285 SYNJ2O15056 1496 aa44.76■■■■■ 4.76
VEGFA-208ENST00000417285 TOP2BQ02880 1626 aa44.66■■■■■ 4.74
VEGFA-208ENST00000417285 SYNJ1O43426 1573 aa44.65■■■■■ 4.74
VEGFA-208ENST00000417285 ABCA5Q8WWZ7 1642 aa44.62■■■■■ 4.73
VEGFA-208ENST00000417285 BIVM-ERCC5R4GMW8 1640 aa44.61■■■■■ 4.73
VEGFA-208ENST00000417285 PBRM1Q86U86 1689 aa44.58■■■■■ 4.73
VEGFA-208ENST00000417285 CLASP1Q7Z460 1538 aa44.58■■■■■ 4.73
VEGFA-208ENST00000417285 ARAP1Q96P48 1450 aa44.53■■■■■ 4.72
VEGFA-208ENST00000417285 GRIN2AQ12879 1464 aa44.34■■■■■ 4.69
VEGFA-208ENST00000417285 FHAD1B1AJZ9 1412 aa44.33■■■■■ 4.69
VEGFA-208ENST00000417285 ERICH3Q5RHP9 1530 aa44.29■■■■■ 4.68
VEGFA-208ENST00000417285 ADAMTS12P58397 1594 aa44.26■■■■■ 4.68
VEGFA-208ENST00000417285 NUP160Q12769 1436 aa44.2■■■■■ 4.67
VEGFA-208ENST00000417285 TRHP20396 242 aaPredicted RBP44.16■■■■■ 4.66
VEGFA-208ENST00000417285 CEP170Q5SW79 1584 aa44.07■■■■■ 4.65
VEGFA-208ENST00000417285 KIF27Q86VH2 1401 aa43.94■■■■■ 4.62
VEGFA-208ENST00000417285 IGF1RP08069 1367 aa43.9■■■■■ 4.62
VEGFA-208ENST00000417285 JPH4Q96JJ6 628 aa43.88■■■■■ 4.62
VEGFA-208ENST00000417285 SHROOM2Q13796 1616 aa43.86■■■■■ 4.61
VEGFA-208ENST00000417285 ERCC6L2Q5T890 1561 aa43.86■■■■■ 4.61
VEGFA-208ENST00000417285 PRG4Q92954 1404 aaPredicted RBP43.78■■■■■ 4.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms