RNA–Protein interactions for RNA: ENST00000392351.7

HOMER3-202, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,557 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-202ENST00000392351 NISCHQ9Y2I1 1504 aa60.6■■■■■ 7.29
HOMER3-202ENST00000392351 CCDC180Q9P1Z9 1646 aa53.65■■■■■ 6.18
HOMER3-202ENST00000392351 ABCC9O60706 1549 aa51.89■■■■■ 5.9
HOMER3-202ENST00000392351 ZCCHC6Q5VYS8 1495 aaKnown RBP50.62■■■■■ 5.69
HOMER3-202ENST00000392351 DCAF8L2P0C7V8 631 aa50.39■■■■■ 5.66
HOMER3-202ENST00000392351 NACADO15069 1562 aa50.24■■■■■ 5.63
HOMER3-202ENST00000392351 RB1CC1Q8TDY2 1594 aa50.18■■■■■ 5.62
HOMER3-202ENST00000392351 DCAF1Q9Y4B6 1507 aa50.14■■■■■ 5.62
HOMER3-202ENST00000392351 MYO15BQ96JP2 1530 aa50.1■■■■■ 5.61
HOMER3-202ENST00000392351 UNC13AQ9UPW8 1703 aa49.15■■■■■ 5.46
HOMER3-202ENST00000392351 SCRIBQ14160 1630 aa49.04■■■■■ 5.44
HOMER3-202ENST00000392351 BICRAQ9NZM4 1560 aa48.64■■■■■ 5.38
HOMER3-202ENST00000392351 PABPN1Q86U42 306 aaKnown RBP eCLIP48.56■■■■■ 5.36
HOMER3-202ENST00000392351 SHROOM4Q9ULL8 1493 aa48.29■■■■■ 5.32
HOMER3-202ENST00000392351 EIF4G1Q04637 1599 aaKnown RBP47.31■■■■■ 5.16
HOMER3-202ENST00000392351 CECR2Q9BXF3 1484 aa47.15■■■■■ 5.14
HOMER3-202ENST00000392351 DNAJC5BQ9UF47 199 aa47.09■■■■■ 5.13
HOMER3-202ENST00000392351 CC2D2AQ9P2K1 1620 aa46.98■■■■■ 5.11
HOMER3-202ENST00000392351 BAZ1AQ9NRL2 1556 aaPredicted RBP46.94■■■■■ 5.11
HOMER3-202ENST00000392351 SMARCA4P51532 1647 aa46.93■■■■■ 5.1
HOMER3-202ENST00000392351 MROH2BQ7Z745 1585 aa46.73■■■■■ 5.07
HOMER3-202ENST00000392351 ATAD2BQ9ULI0 1458 aa46.46■■■■■ 5.03
HOMER3-202ENST00000392351 SMARCA2P51531 1590 aa46.46■■■■■ 5.03
HOMER3-202ENST00000392351 PEG3Q9GZU2 1588 aa46.42■■■■■ 5.02
HOMER3-202ENST00000392351 RSF1Q96T23 1441 aaPredicted RBP46.38■■■■■ 5.02
HOMER3-202ENST00000392351 NCAPD3P42695 1498 aa46.32■■■■■ 5.01
HOMER3-202ENST00000392351 WIZO95785 1651 aa46.31■■■■■ 5
HOMER3-202ENST00000392351 HMGXB3Q12766 1538 aa46.2■■■■■ 4.99
HOMER3-202ENST00000392351 BAZ1BQ9UIG0 1483 aaKnown RBP46.15■■■■■ 4.98
HOMER3-202ENST00000392351 TOP2AP11388 1531 aaKnown RBP45.81■■■■■ 4.92
HOMER3-202ENST00000392351 SUPT5HO00267 1087 aaKnown RBP45.71■■■■■ 4.91
HOMER3-202ENST00000392351 CCDC88BA6NC98 1476 aa45.25■■■■■ 4.83
HOMER3-202ENST00000392351 NESP48681 1621 aa45.09■■■■■ 4.81
HOMER3-202ENST00000392351 LAMC3Q9Y6N6 1575 aa45.05■■■■■ 4.8
HOMER3-202ENST00000392351 CADPSQ9ULU8 1353 aa45.01■■■■■ 4.8
HOMER3-202ENST00000392351 CFTRP13569 1480 aa44.89■■■■■ 4.78
HOMER3-202ENST00000392351 PRDM2Q13029 1718 aa44.73■■■■■ 4.75
HOMER3-202ENST00000392351 PDS5BQ9NTI5 1447 aa44.7■■■■■ 4.75
HOMER3-202ENST00000392351 ERCC6Q03468 1493 aa44.68■■■■■ 4.74
HOMER3-202ENST00000392351 KIF21AQ7Z4S6 1674 aa44.64■■■■■ 4.74
HOMER3-202ENST00000392351 FANCD2Q9BXW9 1451 aa44.53■■■■■ 4.72
HOMER3-202ENST00000392351 CEP164Q9UPV0 1460 aa44.43■■■■■ 4.7
HOMER3-202ENST00000392351 THOC2Q8NI27 1593 aaKnown RBP44.29■■■■■ 4.68
HOMER3-202ENST00000392351 MRC2Q9UBG0 1479 aa44.22■■■■■ 4.67
HOMER3-202ENST00000392351 WDR62O43379 1518 aa44.07■■■■■ 4.65
HOMER3-202ENST00000392351 URB2Q14146 1524 aaKnown RBP44.06■■■■■ 4.64
HOMER3-202ENST00000392351 CUX2O14529 1486 aa43.94■■■■■ 4.62
HOMER3-202ENST00000392351 DNMBPQ6XZF7 1577 aa43.91■■■■■ 4.62
HOMER3-202ENST00000392351 TOPBP1Q92547 1522 aa43.9■■■■■ 4.62
HOMER3-202ENST00000392351 ABCC8Q09428 1581 aa43.89■■■■■ 4.62
HOMER3-202ENST00000392351 CUX1P39880 1505 aa43.81■■■■■ 4.6
HOMER3-202ENST00000392351 WRNQ14191 1432 aaPredicted RBP eCLIP43.74■■■■■ 4.59
HOMER3-202ENST00000392351 SYNJ1O43426 1573 aa43.64■■■■■ 4.58
HOMER3-202ENST00000392351 BIVM-ERCC5R4GMW8 1640 aa43.62■■■■■ 4.57
HOMER3-202ENST00000392351 TOP2BQ02880 1626 aa43.61■■■■■ 4.57
HOMER3-202ENST00000392351 POLA1P09884 1462 aaPredicted RBP43.57■■■■■ 4.56
HOMER3-202ENST00000392351 FGD5Q6ZNL6 1462 aa43.56■■■■■ 4.56
HOMER3-202ENST00000392351 IFT140Q96RY7 1462 aa43.45■■■■■ 4.55
HOMER3-202ENST00000392351 TARBP1Q13395 1621 aaKnown RBP43.39■■■■■ 4.54
HOMER3-202ENST00000392351 RAD54L2Q9Y4B4 1467 aa43.38■■■■■ 4.53
HOMER3-202ENST00000392351 SOGA1O94964 1423 aa43.37■■■■■ 4.53
HOMER3-202ENST00000392351 ZNF608Q9ULD9 1512 aaPredicted RBP43.23■■■■■ 4.51
HOMER3-202ENST00000392351 WDR97A6NE52 1622 aa43.22■■■■■ 4.51
HOMER3-202ENST00000392351 ABCA10Q8WWZ4 1543 aa43.15■■■■■ 4.5
HOMER3-202ENST00000392351 EIF4G3O43432 1585 aaKnown RBP43.13■■■■■ 4.5
HOMER3-202ENST00000392351 TRIM41Q8WV44 630 aa43.12■■■■■ 4.49
HOMER3-202ENST00000392351 TDRD9Q8NDG6 1382 aaKnown RBP43.06■■■■■ 4.48
HOMER3-202ENST00000392351 AQRO60306 1485 aaKnown RBP eCLIP43.06■■■■■ 4.48
HOMER3-202ENST00000392351 CHIC1Q5VXU3 224 aa42.99■■■■■ 4.47
HOMER3-202ENST00000392351 ABCA5Q8WWZ7 1642 aa42.97■■■■■ 4.47
HOMER3-202ENST00000392351 GAPVD1Q14C86 1478 aa42.91■■■■■ 4.46
HOMER3-202ENST00000392351 PBRM1Q86U86 1689 aa42.86■■■■■ 4.45
HOMER3-202ENST00000392351 GRIN2BQ13224 1484 aa42.8■■■■■ 4.44
HOMER3-202ENST00000392351 KIF27Q86VH2 1401 aa42.76■■■■■ 4.44
HOMER3-202ENST00000392351 SNAPC4Q5SXM2 1469 aa42.69■■■■■ 4.42
HOMER3-202ENST00000392351 ERICH3Q5RHP9 1530 aa42.65■■■■■ 4.42
HOMER3-202ENST00000392351 MAGI1Q96QZ7 1491 aaPredicted RBP42.63■■■■■ 4.41
HOMER3-202ENST00000392351 DNAJC5Q9H3Z4 198 aa42.61■■■■■ 4.41
HOMER3-202ENST00000392351 RUSC2Q8N2Y8 1516 aa42.59■■■■■ 4.41
HOMER3-202ENST00000392351 ADAMTS12P58397 1594 aa42.51■■■■■ 4.4
HOMER3-202ENST00000392351 CHD1O14646 1710 aa42.51■■■■■ 4.4
HOMER3-202ENST00000392351 IGF1RP08069 1367 aa42.49■■■■■ 4.39
HOMER3-202ENST00000392351 SYNJ2O15056 1496 aa42.45■■■■■ 4.39
HOMER3-202ENST00000392351 CUL7Q14999 1698 aa42.43■■■■■ 4.38
HOMER3-202ENST00000392351 FBLN2P98095 1184 aa42.43■■■■■ 4.38
HOMER3-202ENST00000392351 FHAD1B1AJZ9 1412 aa42.41■■■■■ 4.38
HOMER3-202ENST00000392351 CHMP7Q8WUX9 453 aaPredicted RBP42.38■■■■■ 4.37
HOMER3-202ENST00000392351 EEA1Q15075 1411 aa42.34■■■■■ 4.37
HOMER3-202ENST00000392351 GRIN2AQ12879 1464 aa42.27■■■■■ 4.36
HOMER3-202ENST00000392351 CARMIL1Q5VZK9 1371 aa42.27■■■■■ 4.36
HOMER3-202ENST00000392351 FAM9AQ8IZU1 332 aaPredicted RBP42.25■■■■■ 4.35
HOMER3-202ENST00000392351 OSCARQ8IYS5 282 aa42.22■■■■■ 4.35
HOMER3-202ENST00000392351 CSRNP3Q8WYN3 585 aa42.18■■■■■ 4.34
HOMER3-202ENST00000392351 RAPGEF2Q9Y4G8 1499 aa42.1■■■■■ 4.33
HOMER3-202ENST00000392351 PRXQ9BXM0 1461 aa42.09■■■■■ 4.33
HOMER3-202ENST00000392351 CEP170Q5SW79 1584 aa42.06■■■■■ 4.32
HOMER3-202ENST00000392351 NUP160Q12769 1436 aa42.03■■■■■ 4.32
HOMER3-202ENST00000392351 CLASP1Q7Z460 1538 aa41.98■■■■■ 4.31
HOMER3-202ENST00000392351 KIF21BO75037 1637 aa41.91■■■■■ 4.3
HOMER3-202ENST00000392351 KIAA0586Q9BVV6 1533 aa41.79■■■■■ 4.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms