Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC33.75■■■□□ 2.99
RTF1Q92541 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
RTF1Q92541 ST7-205ENST00000393446 2114 ntTSL 5 BASIC33.74■■■□□ 2.99
RTF1Q92541 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC33.74■■■□□ 2.99
RTF1Q92541 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC33.73■■■□□ 2.99
RTF1Q92541 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC33.72■■■□□ 2.99
RTF1Q92541 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC33.71■■■□□ 2.99
RTF1Q92541 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC33.7■■■□□ 2.99
RTF1Q92541 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC33.7■■■□□ 2.99
RTF1Q92541 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.98
RTF1Q92541 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC33.69■■■□□ 2.98
RTF1Q92541 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC33.68■■■□□ 2.98
RTF1Q92541 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
RTF1Q92541 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC33.66■■■□□ 2.98
RTF1Q92541 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC33.66■■■□□ 2.98
RTF1Q92541 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC33.65■■■□□ 2.98
RTF1Q92541 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC33.65■■■□□ 2.98
RTF1Q92541 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC33.65■■■□□ 2.98
RTF1Q92541 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC33.65■■■□□ 2.98
RTF1Q92541 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
RTF1Q92541 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
RTF1Q92541 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
RTF1Q92541 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
RTF1Q92541 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC33.63■■■□□ 2.97
RTF1Q92541 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
RTF1Q92541 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC33.63■■■□□ 2.97
RTF1Q92541 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC33.63■■■□□ 2.97
RTF1Q92541 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
RTF1Q92541 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
RTF1Q92541 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC33.63■■■□□ 2.97
RTF1Q92541 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC33.62■■■□□ 2.97
RTF1Q92541 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC33.62■■■□□ 2.97
RTF1Q92541 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC33.61■■■□□ 2.97
RTF1Q92541 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC33.61■■■□□ 2.97
RTF1Q92541 AC110285.7-201ENST00000624417 1536 ntBASIC33.61■■■□□ 2.97
RTF1Q92541 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC33.61■■■□□ 2.97
RTF1Q92541 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
RTF1Q92541 ST7-202ENST00000323984 2142 ntTSL 5 BASIC33.6■■■□□ 2.97
RTF1Q92541 ST7-207ENST00000393449 2127 ntTSL 5 BASIC33.6■■■□□ 2.97
RTF1Q92541 MEST-211ENST00000437945 1455 ntTSL 5 BASIC33.6■■■□□ 2.97
RTF1Q92541 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
RTF1Q92541 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC33.59■■■□□ 2.97
RTF1Q92541 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC33.59■■■□□ 2.97
RTF1Q92541 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC33.58■■■□□ 2.97
RTF1Q92541 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC33.58■■■□□ 2.97
RTF1Q92541 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC33.58■■■□□ 2.97
RTF1Q92541 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
RTF1Q92541 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC33.57■■■□□ 2.97
RTF1Q92541 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC33.57■■■□□ 2.96
RTF1Q92541 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
RTF1Q92541 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC33.57■■■□□ 2.96
RTF1Q92541 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC33.57■■■□□ 2.96
RTF1Q92541 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
RTF1Q92541 AC008813.1-201ENST00000536597 885 ntBASIC33.56■■■□□ 2.96
RTF1Q92541 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
RTF1Q92541 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC33.55■■■□□ 2.96
RTF1Q92541 AP004833.2-201ENST00000532228 1454 ntBASIC33.55■■■□□ 2.96
RTF1Q92541 ABHD17AP3-201ENST00000503096 1137 ntBASIC33.54■■■□□ 2.96
RTF1Q92541 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC33.53■■■□□ 2.96
RTF1Q92541 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC33.52■■■□□ 2.96
RTF1Q92541 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC33.52■■■□□ 2.96
RTF1Q92541 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
RTF1Q92541 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC33.51■■■□□ 2.95
RTF1Q92541 HSD17B1P1-201ENST00000590052 955 ntBASIC33.51■■■□□ 2.95
RTF1Q92541 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC33.51■■■□□ 2.95
RTF1Q92541 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
RTF1Q92541 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
RTF1Q92541 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC33.5■■■□□ 2.95
RTF1Q92541 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
RTF1Q92541 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC33.48■■■□□ 2.95
RTF1Q92541 SRP68-213ENST00000629930 165 ntTSL 5 BASIC33.48■■■□□ 2.95
RTF1Q92541 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC33.48■■■□□ 2.95
RTF1Q92541 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC33.47■■■□□ 2.95
RTF1Q92541 ABCB10P1-201ENST00000614297 2181 ntBASIC33.47■■■□□ 2.95
RTF1Q92541 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
RTF1Q92541 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
RTF1Q92541 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC33.47■■■□□ 2.95
RTF1Q92541 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC33.47■■■□□ 2.95
RTF1Q92541 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC33.46■■■□□ 2.95
RTF1Q92541 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC33.45■■■□□ 2.95
RTF1Q92541 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC33.45■■■□□ 2.95
RTF1Q92541 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC33.44■■■□□ 2.94
RTF1Q92541 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC33.44■■■□□ 2.94
RTF1Q92541 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
RTF1Q92541 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC33.43■■■□□ 2.94
RTF1Q92541 TPT1-202ENST00000379055 948 ntTSL 2 BASIC33.43■■■□□ 2.94
RTF1Q92541 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
RTF1Q92541 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC33.43■■■□□ 2.94
RTF1Q92541 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
RTF1Q92541 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC33.42■■■□□ 2.94
RTF1Q92541 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
RTF1Q92541 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC33.41■■■□□ 2.94
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms