RNA–Protein interactions for RNA: ENST00000398137.5

U2AF1-203, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best) BASIC

Gene U2AF1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-203ENST00000398137 NISCHQ9Y2I1 1504 aa62.27■■■■■ 7.56
U2AF1-203ENST00000398137 CCDC180Q9P1Z9 1646 aa55.65■■■■■ 6.5
U2AF1-203ENST00000398137 ABCC9O60706 1549 aa55.17■■■■■ 6.42
U2AF1-203ENST00000398137 RB1CC1Q8TDY2 1594 aa52.69■■■■■ 6.03
U2AF1-203ENST00000398137 NACADO15069 1562 aa52.47■■■■■ 5.99
U2AF1-203ENST00000398137 DCAF8L2P0C7V8 631 aa52.18■■■■■ 5.94
U2AF1-203ENST00000398137 MYO15BQ96JP2 1530 aa51.93■■■■■ 5.9
U2AF1-203ENST00000398137 ZCCHC6Q5VYS8 1495 aaKnown RBP51.73■■■■■ 5.87
U2AF1-203ENST00000398137 UNC13AQ9UPW8 1703 aa51.67■■■■■ 5.86
U2AF1-203ENST00000398137 DCAF1Q9Y4B6 1507 aa51.45■■■■■ 5.83
U2AF1-203ENST00000398137 PABPN1Q86U42 306 aaKnown RBP eCLIP51.44■■■■■ 5.83
U2AF1-203ENST00000398137 DNAJC5BQ9UF47 199 aa51.44■■■■■ 5.83
U2AF1-203ENST00000398137 BICRAQ9NZM4 1560 aa51.3■■■■■ 5.8
U2AF1-203ENST00000398137 SCRIBQ14160 1630 aa50.74■■■■■ 5.71
U2AF1-203ENST00000398137 SHROOM4Q9ULL8 1493 aa50.49■■■■■ 5.67
U2AF1-203ENST00000398137 EIF4G1Q04637 1599 aaKnown RBP49.91■■■■■ 5.58
U2AF1-203ENST00000398137 CC2D2AQ9P2K1 1620 aa49.9■■■■■ 5.58
U2AF1-203ENST00000398137 CECR2Q9BXF3 1484 aa49.63■■■■■ 5.53
U2AF1-203ENST00000398137 SMARCA4P51532 1647 aa48.48■■■■■ 5.35
U2AF1-203ENST00000398137 NCAPD3P42695 1498 aa48.47■■■■■ 5.35
U2AF1-203ENST00000398137 ATAD2BQ9ULI0 1458 aa48.4■■■■■ 5.34
U2AF1-203ENST00000398137 BAZ1AQ9NRL2 1556 aaPredicted RBP48.25■■■■■ 5.31
U2AF1-203ENST00000398137 SMARCA2P51531 1590 aa48.22■■■■■ 5.31
U2AF1-203ENST00000398137 HMGXB3Q12766 1538 aa48.14■■■■■ 5.3
U2AF1-203ENST00000398137 MROH2BQ7Z745 1585 aa48.03■■■■■ 5.28
U2AF1-203ENST00000398137 PEG3Q9GZU2 1588 aa48.03■■■■■ 5.28
U2AF1-203ENST00000398137 BAZ1BQ9UIG0 1483 aaKnown RBP47.89■■■■■ 5.26
U2AF1-203ENST00000398137 NESP48681 1621 aa47.6■■■■■ 5.21
U2AF1-203ENST00000398137 ERCC6Q03468 1493 aa47.5■■■■■ 5.19
U2AF1-203ENST00000398137 WIZO95785 1651 aa47.48■■■■■ 5.19
U2AF1-203ENST00000398137 CUX2O14529 1486 aa47.31■■■■■ 5.16
U2AF1-203ENST00000398137 LAMC3Q9Y6N6 1575 aa47.27■■■■■ 5.16
U2AF1-203ENST00000398137 RSF1Q96T23 1441 aaPredicted RBP47.18■■■■■ 5.14
U2AF1-203ENST00000398137 THOC2Q8NI27 1593 aaKnown RBP47.03■■■■■ 5.12
U2AF1-203ENST00000398137 KIF21AQ7Z4S6 1674 aa47■■■■■ 5.12
U2AF1-203ENST00000398137 CADPSQ9ULU8 1353 aa46.98■■■■■ 5.11
U2AF1-203ENST00000398137 PDS5BQ9NTI5 1447 aa46.91■■■■■ 5.1
U2AF1-203ENST00000398137 TOP2AP11388 1531 aaKnown RBP46.85■■■■■ 5.09
U2AF1-203ENST00000398137 DNAJC5Q9H3Z4 198 aa46.76■■■■■ 5.08
U2AF1-203ENST00000398137 CFTRP13569 1480 aa46.58■■■■■ 5.05
U2AF1-203ENST00000398137 MRC2Q9UBG0 1479 aa46.54■■■■■ 5.04
U2AF1-203ENST00000398137 WDR62O43379 1518 aa46.46■■■■■ 5.03
U2AF1-203ENST00000398137 FANCD2Q9BXW9 1451 aa46.45■■■■■ 5.03
U2AF1-203ENST00000398137 CEP164Q9UPV0 1460 aa46.43■■■■■ 5.02
U2AF1-203ENST00000398137 CCDC88BA6NC98 1476 aa46.34■■■■■ 5.01
U2AF1-203ENST00000398137 PRDM2Q13029 1718 aa46.18■■■■■ 4.98
U2AF1-203ENST00000398137 URB2Q14146 1524 aaKnown RBP46.11■■■■■ 4.97
U2AF1-203ENST00000398137 SUPT5HO00267 1087 aaKnown RBP45.69■■■■■ 4.9
U2AF1-203ENST00000398137 TOPBP1Q92547 1522 aa45.66■■■■■ 4.9
U2AF1-203ENST00000398137 DNMBPQ6XZF7 1577 aa45.51■■■■■ 4.88
U2AF1-203ENST00000398137 ABCC8Q09428 1581 aa45.49■■■■■ 4.87
U2AF1-203ENST00000398137 IFT140Q96RY7 1462 aa45.48■■■■■ 4.87
U2AF1-203ENST00000398137 ZNF608Q9ULD9 1512 aaPredicted RBP45.47■■■■■ 4.87
U2AF1-203ENST00000398137 TARBP1Q13395 1621 aaKnown RBP45.26■■■■■ 4.84
U2AF1-203ENST00000398137 POLA1P09884 1462 aaPredicted RBP45.23■■■■■ 4.83
U2AF1-203ENST00000398137 EIF4G3O43432 1585 aaKnown RBP45.21■■■■■ 4.83
U2AF1-203ENST00000398137 OSCARQ8IYS5 282 aa45.18■■■■■ 4.82
U2AF1-203ENST00000398137 CUX1P39880 1505 aa45.09■■■■■ 4.81
U2AF1-203ENST00000398137 AQRO60306 1485 aaKnown RBP eCLIP45.07■■■■■ 4.81
U2AF1-203ENST00000398137 RAD54L2Q9Y4B4 1467 aa45.06■■■■■ 4.8
U2AF1-203ENST00000398137 FGD5Q6ZNL6 1462 aa45■■■■■ 4.79
U2AF1-203ENST00000398137 SOGA1O94964 1423 aa44.97■■■■■ 4.79
U2AF1-203ENST00000398137 TDRD9Q8NDG6 1382 aaKnown RBP44.84■■■■■ 4.77
U2AF1-203ENST00000398137 TRIM41Q8WV44 630 aa44.84■■■■■ 4.77
U2AF1-203ENST00000398137 CHD1O14646 1710 aa44.8■■■■■ 4.76
U2AF1-203ENST00000398137 WDR97A6NE52 1622 aa44.74■■■■■ 4.75
U2AF1-203ENST00000398137 RIMBP3CA6NJZ7 1639 aa44.66■■■■■ 4.74
U2AF1-203ENST00000398137 RIMBP3BA6NNM3 1639 aa44.66■■■■■ 4.74
U2AF1-203ENST00000398137 RIMBP3Q9UFD9 1639 aa44.66■■■■■ 4.74
U2AF1-203ENST00000398137 SNAPC4Q5SXM2 1469 aa44.61■■■■■ 4.73
U2AF1-203ENST00000398137 ARHGEF11O15085 1522 aa44.55■■■■■ 4.72
U2AF1-203ENST00000398137 FBLN2P98095 1184 aa44.53■■■■■ 4.72
U2AF1-203ENST00000398137 GRIN2BQ13224 1484 aa44.53■■■■■ 4.72
U2AF1-203ENST00000398137 ABCA10Q8WWZ4 1543 aa44.51■■■■■ 4.72
U2AF1-203ENST00000398137 MAGI1Q96QZ7 1491 aaPredicted RBP44.48■■■■■ 4.71
U2AF1-203ENST00000398137 BIVM-ERCC5R4GMW8 1640 aa44.48■■■■■ 4.71
U2AF1-203ENST00000398137 SYNJ1O43426 1573 aa44.47■■■■■ 4.71
U2AF1-203ENST00000398137 TOP2BQ02880 1626 aa44.46■■■■■ 4.71
U2AF1-203ENST00000398137 PBRM1Q86U86 1689 aa44.45■■■■■ 4.71
U2AF1-203ENST00000398137 ABCA5Q8WWZ7 1642 aa44.45■■■■■ 4.71
U2AF1-203ENST00000398137 GAPVD1Q14C86 1478 aa44.44■■■■■ 4.7
U2AF1-203ENST00000398137 WRNQ14191 1432 aaPredicted RBP eCLIP44.43■■■■■ 4.7
U2AF1-203ENST00000398137 SYNJ2O15056 1496 aa44.34■■■■■ 4.69
U2AF1-203ENST00000398137 CLASP1Q7Z460 1538 aa44.3■■■■■ 4.68
U2AF1-203ENST00000398137 CHMP7Q8WUX9 453 aaPredicted RBP44.3■■■■■ 4.68
U2AF1-203ENST00000398137 ARAP1Q96P48 1450 aa44.18■■■■■ 4.66
U2AF1-203ENST00000398137 CYB5RLQ6IPT4 315 aa44.12■■■■■ 4.65
U2AF1-203ENST00000398137 ADAMTS12P58397 1594 aa44.05■■■■■ 4.64
U2AF1-203ENST00000398137 GRIN2AQ12879 1464 aa43.98■■■■■ 4.63
U2AF1-203ENST00000398137 ERICH3Q5RHP9 1530 aa43.94■■■■■ 4.63
U2AF1-203ENST00000398137 FHAD1B1AJZ9 1412 aa43.89■■■■■ 4.62
U2AF1-203ENST00000398137 CEP170Q5SW79 1584 aa43.87■■■■■ 4.61
U2AF1-203ENST00000398137 NUP160Q12769 1436 aa43.85■■■■■ 4.61
U2AF1-203ENST00000398137 ERCC6L2Q5T890 1561 aa43.71■■■■■ 4.59
U2AF1-203ENST00000398137 SHROOM2Q13796 1616 aa43.63■■■■■ 4.58
U2AF1-203ENST00000398137 IGF1RP08069 1367 aa43.53■■■■■ 4.56
U2AF1-203ENST00000398137 KIF27Q86VH2 1401 aa43.51■■■■■ 4.56
U2AF1-203ENST00000398137 RUSC2Q8N2Y8 1516 aa43.43■■■■■ 4.54
U2AF1-203ENST00000398137 TRHP20396 242 aaPredicted RBP43.39■■■■■ 4.54
U2AF1-203ENST00000398137 CUL7Q14999 1698 aa43.39■■■■■ 4.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms