RNA–Protein interactions for RNA: ENST00000291552.8

U2AF1-201, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene U2AF1, Length 962 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-201ENST00000291552 NISCHQ9Y2I1 1504 aa63.2■■■■■ 7.71
U2AF1-201ENST00000291552 CCDC180Q9P1Z9 1646 aa56.65■■■■■ 6.66
U2AF1-201ENST00000291552 ABCC9O60706 1549 aa56.23■■■■■ 6.59
U2AF1-201ENST00000291552 RB1CC1Q8TDY2 1594 aa53.67■■■■■ 6.18
U2AF1-201ENST00000291552 NACADO15069 1562 aa53.38■■■■■ 6.14
U2AF1-201ENST00000291552 DCAF8L2P0C7V8 631 aa52.96■■■■■ 6.07
U2AF1-201ENST00000291552 MYO15BQ96JP2 1530 aa52.77■■■■■ 6.04
U2AF1-201ENST00000291552 UNC13AQ9UPW8 1703 aa52.67■■■■■ 6.02
U2AF1-201ENST00000291552 ZCCHC6Q5VYS8 1495 aaKnown RBP52.49■■■■■ 5.99
U2AF1-201ENST00000291552 DNAJC5BQ9UF47 199 aa52.47■■■■■ 5.99
U2AF1-201ENST00000291552 PABPN1Q86U42 306 aaKnown RBP eCLIP52.33■■■■■ 5.97
U2AF1-201ENST00000291552 DCAF1Q9Y4B6 1507 aa52.24■■■■■ 5.95
U2AF1-201ENST00000291552 BICRAQ9NZM4 1560 aa52.22■■■■■ 5.95
U2AF1-201ENST00000291552 SCRIBQ14160 1630 aa51.62■■■■■ 5.85
U2AF1-201ENST00000291552 SHROOM4Q9ULL8 1493 aa51.44■■■■■ 5.83
U2AF1-201ENST00000291552 CC2D2AQ9P2K1 1620 aa50.87■■■■■ 5.73
U2AF1-201ENST00000291552 EIF4G1Q04637 1599 aaKnown RBP50.85■■■■■ 5.73
U2AF1-201ENST00000291552 CECR2Q9BXF3 1484 aa50.6■■■■■ 5.69
U2AF1-201ENST00000291552 SMARCA4P51532 1647 aa49.28■■■■■ 5.48
U2AF1-201ENST00000291552 NCAPD3P42695 1498 aa49.26■■■■■ 5.48
U2AF1-201ENST00000291552 ATAD2BQ9ULI0 1458 aa49.18■■■■■ 5.46
U2AF1-201ENST00000291552 SMARCA2P51531 1590 aa49.05■■■■■ 5.44
U2AF1-201ENST00000291552 BAZ1AQ9NRL2 1556 aaPredicted RBP49.02■■■■■ 5.44
U2AF1-201ENST00000291552 HMGXB3Q12766 1538 aa48.99■■■■■ 5.43
U2AF1-201ENST00000291552 PEG3Q9GZU2 1588 aa48.81■■■■■ 5.4
U2AF1-201ENST00000291552 MROH2BQ7Z745 1585 aa48.73■■■■■ 5.39
U2AF1-201ENST00000291552 BAZ1BQ9UIG0 1483 aaKnown RBP48.7■■■■■ 5.39
U2AF1-201ENST00000291552 ERCC6Q03468 1493 aa48.46■■■■■ 5.35
U2AF1-201ENST00000291552 NESP48681 1621 aa48.46■■■■■ 5.35
U2AF1-201ENST00000291552 CUX2O14529 1486 aa48.31■■■■■ 5.32
U2AF1-201ENST00000291552 WIZO95785 1651 aa48.2■■■■■ 5.31
U2AF1-201ENST00000291552 LAMC3Q9Y6N6 1575 aa48.13■■■■■ 5.3
U2AF1-201ENST00000291552 THOC2Q8NI27 1593 aaKnown RBP47.97■■■■■ 5.27
U2AF1-201ENST00000291552 KIF21AQ7Z4S6 1674 aa47.92■■■■■ 5.26
U2AF1-201ENST00000291552 DNAJC5Q9H3Z4 198 aa47.86■■■■■ 5.25
U2AF1-201ENST00000291552 RSF1Q96T23 1441 aaPredicted RBP47.8■■■■■ 5.24
U2AF1-201ENST00000291552 CADPSQ9ULU8 1353 aa47.75■■■■■ 5.23
U2AF1-201ENST00000291552 PDS5BQ9NTI5 1447 aa47.74■■■■■ 5.23
U2AF1-201ENST00000291552 TOP2AP11388 1531 aaKnown RBP47.57■■■■■ 5.21
U2AF1-201ENST00000291552 MRC2Q9UBG0 1479 aa47.4■■■■■ 5.18
U2AF1-201ENST00000291552 WDR62O43379 1518 aa47.32■■■■■ 5.17
U2AF1-201ENST00000291552 CFTRP13569 1480 aa47.32■■■■■ 5.17
U2AF1-201ENST00000291552 CEP164Q9UPV0 1460 aa47.26■■■■■ 5.16
U2AF1-201ENST00000291552 FANCD2Q9BXW9 1451 aa47.24■■■■■ 5.15
U2AF1-201ENST00000291552 PRDM2Q13029 1718 aa47.04■■■■■ 5.12
U2AF1-201ENST00000291552 CCDC88BA6NC98 1476 aa46.99■■■■■ 5.11
U2AF1-201ENST00000291552 URB2Q14146 1524 aaKnown RBP46.9■■■■■ 5.1
U2AF1-201ENST00000291552 TOPBP1Q92547 1522 aa46.42■■■■■ 5.02
U2AF1-201ENST00000291552 DNMBPQ6XZF7 1577 aa46.3■■■■■ 5
U2AF1-201ENST00000291552 IFT140Q96RY7 1462 aa46.29■■■■■ 5
U2AF1-201ENST00000291552 ZNF608Q9ULD9 1512 aaPredicted RBP46.26■■■■■ 5
U2AF1-201ENST00000291552 ABCC8Q09428 1581 aa46.24■■■■■ 4.99
U2AF1-201ENST00000291552 EIF4G3O43432 1585 aaKnown RBP46.06■■■■■ 4.96
U2AF1-201ENST00000291552 TARBP1Q13395 1621 aaKnown RBP46.05■■■■■ 4.96
U2AF1-201ENST00000291552 OSCARQ8IYS5 282 aa46.03■■■■■ 4.96
U2AF1-201ENST00000291552 POLA1P09884 1462 aaPredicted RBP45.97■■■■■ 4.95
U2AF1-201ENST00000291552 TRIM41Q8WV44 630 aa45.85■■■■■ 4.93
U2AF1-201ENST00000291552 AQRO60306 1485 aaKnown RBP eCLIP45.82■■■■■ 4.93
U2AF1-201ENST00000291552 RAD54L2Q9Y4B4 1467 aa45.78■■■■■ 4.92
U2AF1-201ENST00000291552 CUX1P39880 1505 aa45.77■■■■■ 4.92
U2AF1-201ENST00000291552 SUPT5HO00267 1087 aaKnown RBP45.77■■■■■ 4.92
U2AF1-201ENST00000291552 FGD5Q6ZNL6 1462 aa45.73■■■■■ 4.91
U2AF1-201ENST00000291552 CHD1O14646 1710 aa45.7■■■■■ 4.91
U2AF1-201ENST00000291552 SOGA1O94964 1423 aa45.67■■■■■ 4.9
U2AF1-201ENST00000291552 RIMBP3CA6NJZ7 1639 aa45.62■■■■■ 4.89
U2AF1-201ENST00000291552 RIMBP3BA6NNM3 1639 aa45.62■■■■■ 4.89
U2AF1-201ENST00000291552 RIMBP3Q9UFD9 1639 aa45.62■■■■■ 4.89
U2AF1-201ENST00000291552 TDRD9Q8NDG6 1382 aaKnown RBP45.56■■■■■ 4.88
U2AF1-201ENST00000291552 WDR97A6NE52 1622 aa45.54■■■■■ 4.88
U2AF1-201ENST00000291552 ARHGEF11O15085 1522 aa45.47■■■■■ 4.87
U2AF1-201ENST00000291552 SNAPC4Q5SXM2 1469 aa45.4■■■■■ 4.86
U2AF1-201ENST00000291552 FBLN2P98095 1184 aa45.31■■■■■ 4.84
U2AF1-201ENST00000291552 GRIN2BQ13224 1484 aa45.27■■■■■ 4.84
U2AF1-201ENST00000291552 PBRM1Q86U86 1689 aa45.27■■■■■ 4.84
U2AF1-201ENST00000291552 MAGI1Q96QZ7 1491 aaPredicted RBP45.26■■■■■ 4.84
U2AF1-201ENST00000291552 ABCA10Q8WWZ4 1543 aa45.21■■■■■ 4.83
U2AF1-201ENST00000291552 ABCA5Q8WWZ7 1642 aa45.2■■■■■ 4.83
U2AF1-201ENST00000291552 BIVM-ERCC5R4GMW8 1640 aa45.16■■■■■ 4.82
U2AF1-201ENST00000291552 GAPVD1Q14C86 1478 aa45.16■■■■■ 4.82
U2AF1-201ENST00000291552 CLASP1Q7Z460 1538 aa45.15■■■■■ 4.82
U2AF1-201ENST00000291552 TOP2BQ02880 1626 aa45.12■■■■■ 4.81
U2AF1-201ENST00000291552 SYNJ1O43426 1573 aa45.11■■■■■ 4.81
U2AF1-201ENST00000291552 SYNJ2O15056 1496 aa45.1■■■■■ 4.81
U2AF1-201ENST00000291552 ARAP1Q96P48 1450 aa45.07■■■■■ 4.81
U2AF1-201ENST00000291552 WRNQ14191 1432 aaPredicted RBP eCLIP45.04■■■■■ 4.8
U2AF1-201ENST00000291552 CHMP7Q8WUX9 453 aaPredicted RBP45.04■■■■■ 4.8
U2AF1-201ENST00000291552 CYB5RLQ6IPT4 315 aa44.95■■■■■ 4.79
U2AF1-201ENST00000291552 ADAMTS12P58397 1594 aa44.83■■■■■ 4.77
U2AF1-201ENST00000291552 GRIN2AQ12879 1464 aa44.73■■■■■ 4.75
U2AF1-201ENST00000291552 ERICH3Q5RHP9 1530 aa44.65■■■■■ 4.74
U2AF1-201ENST00000291552 CEP170Q5SW79 1584 aa44.63■■■■■ 4.73
U2AF1-201ENST00000291552 FHAD1B1AJZ9 1412 aa44.59■■■■■ 4.73
U2AF1-201ENST00000291552 NUP160Q12769 1436 aa44.58■■■■■ 4.73
U2AF1-201ENST00000291552 ERCC6L2Q5T890 1561 aa44.49■■■■■ 4.71
U2AF1-201ENST00000291552 SHROOM2Q13796 1616 aa44.42■■■■■ 4.7
U2AF1-201ENST00000291552 TRHP20396 242 aaPredicted RBP44.29■■■■■ 4.68
U2AF1-201ENST00000291552 RUSC2Q8N2Y8 1516 aa44.19■■■■■ 4.67
U2AF1-201ENST00000291552 KIF27Q86VH2 1401 aa44.13■■■■■ 4.65
U2AF1-201ENST00000291552 CUL7Q14999 1698 aa44.1■■■■■ 4.65
U2AF1-201ENST00000291552 IGF1RP08069 1367 aa44.1■■■■■ 4.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms