Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC45.21■■■■■ 4.83
RTF1Q92541 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC44.08■■■■■ 4.65
RTF1Q92541 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC43.95■■■■■ 4.63
RTF1Q92541 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC43.86■■■■■ 4.61
RTF1Q92541 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC43.78■■■■■ 4.6
RTF1Q92541 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC43.75■■■■■ 4.59
RTF1Q92541 AL356512.1-201ENST00000607453 1739 ntBASIC43.65■■■■■ 4.58
RTF1Q92541 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC43.18■■■■■ 4.5
RTF1Q92541 HES6-203ENST00000409160 1600 ntTSL 2 BASIC42.6■■■■■ 4.41
RTF1Q92541 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC42.54■■■■■ 4.4
RTF1Q92541 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC42.25■■■■■ 4.35
RTF1Q92541 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC42.25■■■■■ 4.35
RTF1Q92541 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC42.22■■■■■ 4.35
RTF1Q92541 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC42.13■■■■■ 4.33
RTF1Q92541 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC41.97■■■■■ 4.31
RTF1Q92541 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC41.97■■■■■ 4.31
RTF1Q92541 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC41.94■■■■■ 4.3
RTF1Q92541 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC41.8■■■■■ 4.28
RTF1Q92541 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC41.74■■■■■ 4.27
RTF1Q92541 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC41.42■■■■■ 4.22
RTF1Q92541 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC41.41■■■■■ 4.22
RTF1Q92541 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC41.27■■■■■ 4.2
RTF1Q92541 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC41.24■■■■■ 4.19
RTF1Q92541 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC41.11■■■■■ 4.17
RTF1Q92541 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC40.87■■■■■ 4.13
RTF1Q92541 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC40.87■■■■■ 4.13
RTF1Q92541 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC40.82■■■■■ 4.12
RTF1Q92541 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC40.74■■■■■ 4.11
RTF1Q92541 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC40.72■■■■■ 4.11
RTF1Q92541 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC40.67■■■■■ 4.1
RTF1Q92541 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC40.57■■■■■ 4.09
RTF1Q92541 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC40.53■■■■■ 4.08
RTF1Q92541 INO80B-203ENST00000409917 796 ntTSL 2 BASIC40.53■■■■■ 4.08
RTF1Q92541 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC40.42■■■■■ 4.06
RTF1Q92541 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC40.34■■■■■ 4.05
RTF1Q92541 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC40.33■■■■■ 4.05
RTF1Q92541 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC40.21■■■■■ 4.03
RTF1Q92541 AC015813.7-201ENST00000623294 581 ntBASIC40.03■■■■■ 4
RTF1Q92541 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC39.97■■■■□ 3.99
RTF1Q92541 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC39.93■■■■□ 3.98
RTF1Q92541 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC39.93■■■■□ 3.98
RTF1Q92541 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC39.92■■■■□ 3.98
RTF1Q92541 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC39.89■■■■□ 3.98
RTF1Q92541 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC39.84■■■■□ 3.97
RTF1Q92541 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC39.82■■■■□ 3.97
RTF1Q92541 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
RTF1Q92541 AC006077.2-201ENST00000623591 457 ntBASIC39.73■■■■□ 3.95
RTF1Q92541 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC39.71■■■■□ 3.95
RTF1Q92541 ZNRF2P1-201ENST00000441407 443 ntBASIC39.61■■■■□ 3.93
RTF1Q92541 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC39.56■■■■□ 3.92
RTF1Q92541 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC39.55■■■■□ 3.92
RTF1Q92541 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC39.54■■■■□ 3.92
RTF1Q92541 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC39.52■■■■□ 3.92
RTF1Q92541 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC39.47■■■■□ 3.91
RTF1Q92541 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC39.41■■■■□ 3.9
RTF1Q92541 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC39.38■■■■□ 3.89
RTF1Q92541 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
RTF1Q92541 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC39.32■■■■□ 3.89
RTF1Q92541 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC39.2■■■■□ 3.87
RTF1Q92541 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
RTF1Q92541 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC39.14■■■■□ 3.86
RTF1Q92541 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC39.06■■■■□ 3.84
RTF1Q92541 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC39.06■■■■□ 3.84
RTF1Q92541 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
RTF1Q92541 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC38.98■■■■□ 3.83
RTF1Q92541 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC38.96■■■■□ 3.83
RTF1Q92541 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.81
RTF1Q92541 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
RTF1Q92541 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
RTF1Q92541 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC38.77■■■■□ 3.8
RTF1Q92541 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
RTF1Q92541 AP002365.1-201ENST00000603448 772 ntBASIC38.66■■■■□ 3.78
RTF1Q92541 ILK-212ENST00000532063 1617 ntTSL 2 BASIC38.66■■■■□ 3.78
RTF1Q92541 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC38.63■■■■□ 3.77
RTF1Q92541 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
RTF1Q92541 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC38.54■■■■□ 3.76
RTF1Q92541 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC38.54■■■■□ 3.76
RTF1Q92541 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC38.53■■■■□ 3.76
RTF1Q92541 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC38.52■■■■□ 3.76
RTF1Q92541 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
RTF1Q92541 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
RTF1Q92541 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
RTF1Q92541 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC38.46■■■■□ 3.75
RTF1Q92541 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC38.46■■■■□ 3.75
RTF1Q92541 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC38.45■■■■□ 3.75
RTF1Q92541 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC38.41■■■■□ 3.74
RTF1Q92541 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC38.37■■■■□ 3.73
RTF1Q92541 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
RTF1Q92541 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC38.34■■■■□ 3.73
RTF1Q92541 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC38.33■■■■□ 3.73
RTF1Q92541 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC38.31■■■■□ 3.72
RTF1Q92541 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC38.31■■■■□ 3.72
RTF1Q92541 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC38.28■■■■□ 3.72
RTF1Q92541 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC38.28■■■■□ 3.72
RTF1Q92541 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
RTF1Q92541 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
RTF1Q92541 DYNLL1-208ENST00000550178 581 ntBASIC38.22■■■■□ 3.71
RTF1Q92541 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC38.19■■■■□ 3.7
RTF1Q92541 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC38.19■■■■□ 3.7
RTF1Q92541 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC38.17■■■■□ 3.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms