Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CHST11-202ENST00000546689 756 ntTSL 2 BASIC27.84■■■□□ 2.05
SMIM28A0A1B0GU29 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMIM28A0A1B0GU29 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMIM28A0A1B0GU29 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC27.82■■■□□ 2.04
SMIM28A0A1B0GU29 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SMIM28A0A1B0GU29 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
SMIM28A0A1B0GU29 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC27.8■■■□□ 2.04
SMIM28A0A1B0GU29 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SMIM28A0A1B0GU29 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC27.79■■■□□ 2.04
SMIM28A0A1B0GU29 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27.79■■■□□ 2.04
SMIM28A0A1B0GU29 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SMIM28A0A1B0GU29 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SMIM28A0A1B0GU29 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC27.78■■■□□ 2.04
SMIM28A0A1B0GU29 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
SMIM28A0A1B0GU29 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC27.78■■■□□ 2.04
SMIM28A0A1B0GU29 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC27.77■■■□□ 2.04
SMIM28A0A1B0GU29 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
SMIM28A0A1B0GU29 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC27.76■■■□□ 2.04
SMIM28A0A1B0GU29 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC27.76■■■□□ 2.03
SMIM28A0A1B0GU29 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SMIM28A0A1B0GU29 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC27.76■■■□□ 2.03
SMIM28A0A1B0GU29 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SMIM28A0A1B0GU29 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
SMIM28A0A1B0GU29 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
SMIM28A0A1B0GU29 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC27.75■■■□□ 2.03
SMIM28A0A1B0GU29 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SMIM28A0A1B0GU29 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
SMIM28A0A1B0GU29 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SMIM28A0A1B0GU29 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SMIM28A0A1B0GU29 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SMIM28A0A1B0GU29 ABCB10P1-201ENST00000614297 2181 ntBASIC27.74■■■□□ 2.03
SMIM28A0A1B0GU29 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.73■■■□□ 2.03
SMIM28A0A1B0GU29 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.73■■■□□ 2.03
SMIM28A0A1B0GU29 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
SMIM28A0A1B0GU29 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.72■■■□□ 2.03
SMIM28A0A1B0GU29 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.71■■■□□ 2.03
SMIM28A0A1B0GU29 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
SMIM28A0A1B0GU29 MEST-211ENST00000437945 1455 ntTSL 5 BASIC27.7■■■□□ 2.03
SMIM28A0A1B0GU29 AP004833.2-201ENST00000532228 1454 ntBASIC27.7■■■□□ 2.03
SMIM28A0A1B0GU29 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
SMIM28A0A1B0GU29 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC27.7■■■□□ 2.03
SMIM28A0A1B0GU29 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
SMIM28A0A1B0GU29 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
SMIM28A0A1B0GU29 AC110285.7-201ENST00000624417 1536 ntBASIC27.7■■■□□ 2.02
SMIM28A0A1B0GU29 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
SMIM28A0A1B0GU29 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC27.69■■■□□ 2.02
SMIM28A0A1B0GU29 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
SMIM28A0A1B0GU29 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
SMIM28A0A1B0GU29 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC27.69■■■□□ 2.02
SMIM28A0A1B0GU29 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SMIM28A0A1B0GU29 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SMIM28A0A1B0GU29 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SMIM28A0A1B0GU29 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC27.67■■■□□ 2.02
SMIM28A0A1B0GU29 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
SMIM28A0A1B0GU29 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SMIM28A0A1B0GU29 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SMIM28A0A1B0GU29 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SMIM28A0A1B0GU29 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.66■■■□□ 2.02
SMIM28A0A1B0GU29 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SMIM28A0A1B0GU29 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
SMIM28A0A1B0GU29 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SMIM28A0A1B0GU29 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC27.65■■■□□ 2.02
SMIM28A0A1B0GU29 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC27.65■■■□□ 2.02
SMIM28A0A1B0GU29 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SMIM28A0A1B0GU29 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC27.64■■■□□ 2.02
SMIM28A0A1B0GU29 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.64■■■□□ 2.02
SMIM28A0A1B0GU29 AL139393.2-201ENST00000608721 2025 ntBASIC27.64■■■□□ 2.02
SMIM28A0A1B0GU29 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC27.64■■■□□ 2.02
SMIM28A0A1B0GU29 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.63■■■□□ 2.01
SMIM28A0A1B0GU29 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMIM28A0A1B0GU29 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMIM28A0A1B0GU29 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMIM28A0A1B0GU29 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC27.61■■■□□ 2.01
SMIM28A0A1B0GU29 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SMIM28A0A1B0GU29 AC008813.1-201ENST00000536597 885 ntBASIC27.61■■■□□ 2.01
SMIM28A0A1B0GU29 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
SMIM28A0A1B0GU29 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC27.6■■■□□ 2.01
SMIM28A0A1B0GU29 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC27.59■■■□□ 2.01
SMIM28A0A1B0GU29 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC27.59■■■□□ 2.01
SMIM28A0A1B0GU29 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC27.59■■■□□ 2.01
SMIM28A0A1B0GU29 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC27.59■■■□□ 2.01
SMIM28A0A1B0GU29 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC27.58■■■□□ 2.01
SMIM28A0A1B0GU29 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SMIM28A0A1B0GU29 PEX7-203ENST00000541292 945 ntTSL 5 BASIC27.58■■■□□ 2.01
SMIM28A0A1B0GU29 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SMIM28A0A1B0GU29 AC100797.4-201ENST00000631653 1827 ntBASIC27.57■■■□□ 2
SMIM28A0A1B0GU29 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
SMIM28A0A1B0GU29 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.57■■■□□ 2
SMIM28A0A1B0GU29 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.57■■■□□ 2
SMIM28A0A1B0GU29 SRP68-213ENST00000629930 165 ntTSL 5 BASIC27.57■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 9 ms