Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 EI24-212ENST00000615917 1407 ntTSL 2 BASIC30.65■■■□□ 2.5
ZKSCAN3Q9BRR0 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
ZKSCAN3Q9BRR0 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.65■■■□□ 2.5
ZKSCAN3Q9BRR0 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.65■■■□□ 2.5
ZKSCAN3Q9BRR0 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
ZKSCAN3Q9BRR0 ZNRF2P2-203ENST00000454624 420 ntBASIC30.64■■■□□ 2.5
ZKSCAN3Q9BRR0 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.64■■■□□ 2.49
ZKSCAN3Q9BRR0 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
ZKSCAN3Q9BRR0 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.64■■■□□ 2.49
ZKSCAN3Q9BRR0 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
ZKSCAN3Q9BRR0 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
ZKSCAN3Q9BRR0 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
ZKSCAN3Q9BRR0 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.62■■■□□ 2.49
ZKSCAN3Q9BRR0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
ZKSCAN3Q9BRR0 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
ZKSCAN3Q9BRR0 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
ZKSCAN3Q9BRR0 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
ZKSCAN3Q9BRR0 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
ZKSCAN3Q9BRR0 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
ZKSCAN3Q9BRR0 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ZKSCAN3Q9BRR0 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
ZKSCAN3Q9BRR0 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
ZKSCAN3Q9BRR0 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
ZKSCAN3Q9BRR0 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
ZKSCAN3Q9BRR0 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.58■■■□□ 2.49
ZKSCAN3Q9BRR0 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
ZKSCAN3Q9BRR0 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
ZKSCAN3Q9BRR0 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
ZKSCAN3Q9BRR0 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
ZKSCAN3Q9BRR0 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
ZKSCAN3Q9BRR0 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
ZKSCAN3Q9BRR0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.56■■■□□ 2.48
ZKSCAN3Q9BRR0 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
ZKSCAN3Q9BRR0 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
ZKSCAN3Q9BRR0 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
ZKSCAN3Q9BRR0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.55■■■□□ 2.48
ZKSCAN3Q9BRR0 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
ZKSCAN3Q9BRR0 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
ZKSCAN3Q9BRR0 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
ZKSCAN3Q9BRR0 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.52■■■□□ 2.48
ZKSCAN3Q9BRR0 MIR7108-201ENST00000614319 87 ntBASIC30.52■■■□□ 2.48
ZKSCAN3Q9BRR0 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
ZKSCAN3Q9BRR0 AC139426.1-201ENST00000568218 2529 ntBASIC30.51■■■□□ 2.47
ZKSCAN3Q9BRR0 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
ZKSCAN3Q9BRR0 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
ZKSCAN3Q9BRR0 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
ZKSCAN3Q9BRR0 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.5■■■□□ 2.47
ZKSCAN3Q9BRR0 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
ZKSCAN3Q9BRR0 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
ZKSCAN3Q9BRR0 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.49■■■□□ 2.47
ZKSCAN3Q9BRR0 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.48■■■□□ 2.47
ZKSCAN3Q9BRR0 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.48■■■□□ 2.47
ZKSCAN3Q9BRR0 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZKSCAN3Q9BRR0 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZKSCAN3Q9BRR0 LINC00273-201ENST00000539813 1452 ntBASIC30.47■■■□□ 2.47
ZKSCAN3Q9BRR0 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
ZKSCAN3Q9BRR0 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
ZKSCAN3Q9BRR0 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
ZKSCAN3Q9BRR0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
ZKSCAN3Q9BRR0 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.46■■■□□ 2.47
ZKSCAN3Q9BRR0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
ZKSCAN3Q9BRR0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.46■■■□□ 2.47
ZKSCAN3Q9BRR0 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
ZKSCAN3Q9BRR0 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.46■■■□□ 2.47
ZKSCAN3Q9BRR0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
ZKSCAN3Q9BRR0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
ZKSCAN3Q9BRR0 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
ZKSCAN3Q9BRR0 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.44■■■□□ 2.46
ZKSCAN3Q9BRR0 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
ZKSCAN3Q9BRR0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.44■■■□□ 2.46
ZKSCAN3Q9BRR0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
ZKSCAN3Q9BRR0 AL139393.2-201ENST00000608721 2025 ntBASIC30.43■■■□□ 2.46
ZKSCAN3Q9BRR0 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.43■■■□□ 2.46
ZKSCAN3Q9BRR0 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.42■■■□□ 2.46
ZKSCAN3Q9BRR0 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
ZKSCAN3Q9BRR0 WHAMMP2-203ENST00000563942 1603 ntBASIC30.41■■■□□ 2.46
ZKSCAN3Q9BRR0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.41■■■□□ 2.46
ZKSCAN3Q9BRR0 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.41■■■□□ 2.46
ZKSCAN3Q9BRR0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.41■■■□□ 2.46
ZKSCAN3Q9BRR0 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
ZKSCAN3Q9BRR0 AC135983.2-203ENST00000454486 1613 ntBASIC30.4■■■□□ 2.46
ZKSCAN3Q9BRR0 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.4■■■□□ 2.46
ZKSCAN3Q9BRR0 ABCB10P3-201ENST00000561950 2166 ntBASIC30.4■■■□□ 2.46
ZKSCAN3Q9BRR0 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.4■■■□□ 2.46
ZKSCAN3Q9BRR0 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
ZKSCAN3Q9BRR0 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
ZKSCAN3Q9BRR0 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.38■■■□□ 2.45
ZKSCAN3Q9BRR0 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.38■■■□□ 2.45
ZKSCAN3Q9BRR0 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
ZKSCAN3Q9BRR0 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
ZKSCAN3Q9BRR0 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
ZKSCAN3Q9BRR0 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
ZKSCAN3Q9BRR0 LINC01971-201ENST00000617888 1048 ntBASIC30.36■■■□□ 2.45
ZKSCAN3Q9BRR0 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
ZKSCAN3Q9BRR0 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
ZKSCAN3Q9BRR0 DUX4L11-201ENST00000611504 1267 ntBASIC30.34■■■□□ 2.45
ZKSCAN3Q9BRR0 DUX4L12-201ENST00000614593 1267 ntBASIC30.34■■■□□ 2.45
ZKSCAN3Q9BRR0 DUX4L14-201ENST00000621227 1267 ntBASIC30.34■■■□□ 2.45
ZKSCAN3Q9BRR0 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
ZKSCAN3Q9BRR0 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms