Protein–RNA interactions for Protein: Q96FT9

IFT43, Intraflagellar transport protein 43 homolog, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT43Q96FT9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
IFT43Q96FT9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
IFT43Q96FT9 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.84
IFT43Q96FT9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.51■■□□□ 1.83
IFT43Q96FT9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.51■■□□□ 1.83
IFT43Q96FT9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
IFT43Q96FT9 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
IFT43Q96FT9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
IFT43Q96FT9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.5■■□□□ 1.83
IFT43Q96FT9 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
IFT43Q96FT9 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
IFT43Q96FT9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.5■■□□□ 1.83
IFT43Q96FT9 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
IFT43Q96FT9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT43Q96FT9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.49■■□□□ 1.83
IFT43Q96FT9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.49■■□□□ 1.83
IFT43Q96FT9 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
IFT43Q96FT9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.49■■□□□ 1.83
IFT43Q96FT9 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
IFT43Q96FT9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
IFT43Q96FT9 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT43Q96FT9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
IFT43Q96FT9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
IFT43Q96FT9 ZNRF2P2-203ENST00000454624 420 ntBASIC26.48■■□□□ 1.83
IFT43Q96FT9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.47■■□□□ 1.83
IFT43Q96FT9 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
IFT43Q96FT9 ABCB10P3-201ENST00000561950 2166 ntBASIC26.47■■□□□ 1.83
IFT43Q96FT9 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
IFT43Q96FT9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
IFT43Q96FT9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.46■■□□□ 1.83
IFT43Q96FT9 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.83
IFT43Q96FT9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.45■■□□□ 1.82
IFT43Q96FT9 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.45■■□□□ 1.82
IFT43Q96FT9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
IFT43Q96FT9 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
IFT43Q96FT9 DUX4L29-201ENST00000425409 679 ntBASIC26.44■■□□□ 1.82
IFT43Q96FT9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
IFT43Q96FT9 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
IFT43Q96FT9 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.43■■□□□ 1.82
IFT43Q96FT9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
IFT43Q96FT9 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.42■■□□□ 1.82
IFT43Q96FT9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.42■■□□□ 1.82
IFT43Q96FT9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
IFT43Q96FT9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
IFT43Q96FT9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
IFT43Q96FT9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
IFT43Q96FT9 AC108673.1-201ENST00000510422 1159 ntBASIC26.41■■□□□ 1.82
IFT43Q96FT9 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
IFT43Q96FT9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
IFT43Q96FT9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
IFT43Q96FT9 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
IFT43Q96FT9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.38■■□□□ 1.81
IFT43Q96FT9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
IFT43Q96FT9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
IFT43Q96FT9 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT43Q96FT9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.37■■□□□ 1.81
IFT43Q96FT9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT43Q96FT9 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT43Q96FT9 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT43Q96FT9 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
IFT43Q96FT9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC26.35■■□□□ 1.81
IFT43Q96FT9 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
IFT43Q96FT9 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.35■■□□□ 1.81
IFT43Q96FT9 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
IFT43Q96FT9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.35■■□□□ 1.81
IFT43Q96FT9 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
IFT43Q96FT9 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
IFT43Q96FT9 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
IFT43Q96FT9 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
IFT43Q96FT9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.34■■□□□ 1.81
IFT43Q96FT9 HLA-V-202ENST00000446817 847 ntBASIC26.34■■□□□ 1.81
IFT43Q96FT9 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
IFT43Q96FT9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
IFT43Q96FT9 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
IFT43Q96FT9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.32■■□□□ 1.8
IFT43Q96FT9 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
IFT43Q96FT9 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
IFT43Q96FT9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
IFT43Q96FT9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
IFT43Q96FT9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.31■■□□□ 1.8
IFT43Q96FT9 AC021231.2-201ENST00000594613 730 ntBASIC26.31■■□□□ 1.8
IFT43Q96FT9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
IFT43Q96FT9 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
IFT43Q96FT9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
IFT43Q96FT9 MIR6090-201ENST00000622481 60 ntBASIC26.3■■□□□ 1.8
IFT43Q96FT9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
IFT43Q96FT9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
IFT43Q96FT9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
IFT43Q96FT9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
IFT43Q96FT9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
IFT43Q96FT9 AC127502.1-201ENST00000399971 1502 ntBASIC26.29■■□□□ 1.8
IFT43Q96FT9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
IFT43Q96FT9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.28■■□□□ 1.8
IFT43Q96FT9 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
IFT43Q96FT9 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
IFT43Q96FT9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.27■■□□□ 1.8
IFT43Q96FT9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.25■■□□□ 1.79
IFT43Q96FT9 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
IFT43Q96FT9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.25■■□□□ 1.79
IFT43Q96FT9 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms