Protein–RNA interactions for Protein: Q9P2I0

CPSF2, Cleavage and polyadenylation specificity factor subunit 2, humanhuman

Known RBP Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2Q9P2I0 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CPSF2Q9P2I0 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.53■■□□□ 1.84
CPSF2Q9P2I0 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CPSF2Q9P2I0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CPSF2Q9P2I0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CPSF2Q9P2I0 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.52■■□□□ 1.84
CPSF2Q9P2I0 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CPSF2Q9P2I0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CPSF2Q9P2I0 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.51■■□□□ 1.83
CPSF2Q9P2I0 ST7-AS1-201ENST00000456775 1889 ntBASIC26.51■■□□□ 1.83
CPSF2Q9P2I0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CPSF2Q9P2I0 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CPSF2Q9P2I0 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CPSF2Q9P2I0 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CPSF2Q9P2I0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CPSF2Q9P2I0 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.49■■□□□ 1.83
CPSF2Q9P2I0 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.49■■□□□ 1.83
CPSF2Q9P2I0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CPSF2Q9P2I0 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CPSF2Q9P2I0 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
CPSF2Q9P2I0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.48■■□□□ 1.83
CPSF2Q9P2I0 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CPSF2Q9P2I0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
CPSF2Q9P2I0 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
CPSF2Q9P2I0 AC135731.1-201ENST00000569415 2548 ntBASIC26.46■■□□□ 1.83
CPSF2Q9P2I0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CPSF2Q9P2I0 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CPSF2Q9P2I0 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.45■■□□□ 1.83
CPSF2Q9P2I0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
CPSF2Q9P2I0 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
CPSF2Q9P2I0 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
CPSF2Q9P2I0 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CPSF2Q9P2I0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.42■■□□□ 1.82
CPSF2Q9P2I0 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
CPSF2Q9P2I0 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
CPSF2Q9P2I0 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CPSF2Q9P2I0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CPSF2Q9P2I0 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CPSF2Q9P2I0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CPSF2Q9P2I0 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.41■■□□□ 1.82
CPSF2Q9P2I0 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
CPSF2Q9P2I0 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
CPSF2Q9P2I0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CPSF2Q9P2I0 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CPSF2Q9P2I0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CPSF2Q9P2I0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CPSF2Q9P2I0 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.81
CPSF2Q9P2I0 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CPSF2Q9P2I0 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.37■■□□□ 1.81
CPSF2Q9P2I0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
CPSF2Q9P2I0 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CPSF2Q9P2I0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CPSF2Q9P2I0 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CPSF2Q9P2I0 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CPSF2Q9P2I0 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CPSF2Q9P2I0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CPSF2Q9P2I0 AL135925.1-201ENST00000605920 1701 ntBASIC26.31■■□□□ 1.8
CPSF2Q9P2I0 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.31■■□□□ 1.8
CPSF2Q9P2I0 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CPSF2Q9P2I0 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CPSF2Q9P2I0 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.29■■□□□ 1.8
CPSF2Q9P2I0 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CPSF2Q9P2I0 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.29■■□□□ 1.8
CPSF2Q9P2I0 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CPSF2Q9P2I0 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CPSF2Q9P2I0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.27■■□□□ 1.8
CPSF2Q9P2I0 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CPSF2Q9P2I0 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
CPSF2Q9P2I0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CPSF2Q9P2I0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.25■■□□□ 1.79
CPSF2Q9P2I0 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CPSF2Q9P2I0 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CPSF2Q9P2I0 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.23■■□□□ 1.79
CPSF2Q9P2I0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
CPSF2Q9P2I0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CPSF2Q9P2I0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CPSF2Q9P2I0 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
CPSF2Q9P2I0 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.21■■□□□ 1.79
CPSF2Q9P2I0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.21■■□□□ 1.79
CPSF2Q9P2I0 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CPSF2Q9P2I0 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.2■■□□□ 1.78
CPSF2Q9P2I0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.19■■□□□ 1.78
CPSF2Q9P2I0 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CPSF2Q9P2I0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CPSF2Q9P2I0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.17■■□□□ 1.78
CPSF2Q9P2I0 WASH5P-204ENST00000632292 975 ntBASIC26.17■■□□□ 1.78
CPSF2Q9P2I0 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
CPSF2Q9P2I0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
CPSF2Q9P2I0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
CPSF2Q9P2I0 AL133380.1-201ENST00000506013 324 ntBASIC26.16■■□□□ 1.78
CPSF2Q9P2I0 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.16■■□□□ 1.78
CPSF2Q9P2I0 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CPSF2Q9P2I0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
CPSF2Q9P2I0 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CPSF2Q9P2I0 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.13■■□□□ 1.77
CPSF2Q9P2I0 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
CPSF2Q9P2I0 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CPSF2Q9P2I0 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CPSF2Q9P2I0 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CPSF2Q9P2I0 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms