Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
LSM1O15116 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
LSM1O15116 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
LSM1O15116 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
LSM1O15116 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
LSM1O15116 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.66■■□□□ 1.7
LSM1O15116 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.66■■□□□ 1.7
LSM1O15116 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
LSM1O15116 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
LSM1O15116 AL135925.1-201ENST00000605920 1701 ntBASIC25.66■■□□□ 1.7
LSM1O15116 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
LSM1O15116 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
LSM1O15116 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
LSM1O15116 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
LSM1O15116 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
LSM1O15116 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.63■■□□□ 1.69
LSM1O15116 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.62■■□□□ 1.69
LSM1O15116 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
LSM1O15116 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
LSM1O15116 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC25.61■■□□□ 1.69
LSM1O15116 WASH5P-204ENST00000632292 975 ntBASIC25.61■■□□□ 1.69
LSM1O15116 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
LSM1O15116 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
LSM1O15116 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
LSM1O15116 AL133380.1-201ENST00000506013 324 ntBASIC25.58■■□□□ 1.69
LSM1O15116 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.58■■□□□ 1.69
LSM1O15116 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
LSM1O15116 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
LSM1O15116 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
LSM1O15116 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.56■■□□□ 1.68
LSM1O15116 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.56■■□□□ 1.68
LSM1O15116 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.56■■□□□ 1.68
LSM1O15116 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.56■■□□□ 1.68
LSM1O15116 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
LSM1O15116 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
LSM1O15116 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.52■■□□□ 1.68
LSM1O15116 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
LSM1O15116 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
LSM1O15116 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.51■■□□□ 1.67
LSM1O15116 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
LSM1O15116 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
LSM1O15116 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.49■■□□□ 1.67
LSM1O15116 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
LSM1O15116 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.49■■□□□ 1.67
LSM1O15116 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
LSM1O15116 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
LSM1O15116 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
LSM1O15116 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LSM1O15116 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
LSM1O15116 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
LSM1O15116 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.47■■□□□ 1.67
LSM1O15116 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
LSM1O15116 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.46■■□□□ 1.67
LSM1O15116 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
LSM1O15116 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
LSM1O15116 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
LSM1O15116 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
LSM1O15116 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
LSM1O15116 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
LSM1O15116 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC25.4■■□□□ 1.66
LSM1O15116 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
LSM1O15116 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.39■■□□□ 1.66
LSM1O15116 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
LSM1O15116 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LSM1O15116 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LSM1O15116 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
LSM1O15116 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
LSM1O15116 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
LSM1O15116 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
LSM1O15116 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.35■■□□□ 1.65
LSM1O15116 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
LSM1O15116 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
LSM1O15116 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC25.34■■□□□ 1.65
LSM1O15116 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC25.34■■□□□ 1.65
LSM1O15116 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
LSM1O15116 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
LSM1O15116 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
LSM1O15116 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
LSM1O15116 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
LSM1O15116 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
LSM1O15116 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
LSM1O15116 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
LSM1O15116 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
LSM1O15116 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
LSM1O15116 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
LSM1O15116 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
LSM1O15116 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
LSM1O15116 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
LSM1O15116 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
LSM1O15116 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
LSM1O15116 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.28■■□□□ 1.64
LSM1O15116 RARRES2P7-201ENST00000567349 469 ntBASIC25.28■■□□□ 1.64
LSM1O15116 AL139393.2-201ENST00000608721 2025 ntBASIC25.27■■□□□ 1.64
LSM1O15116 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
LSM1O15116 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
LSM1O15116 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
LSM1O15116 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
LSM1O15116 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
LSM1O15116 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
LSM1O15116 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms