Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC25.2■■□□□ 1.63
PDLIM1O00151 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.2■■□□□ 1.62
PDLIM1O00151 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PDLIM1O00151 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDLIM1O00151 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.19■■□□□ 1.62
PDLIM1O00151 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDLIM1O00151 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDLIM1O00151 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PDLIM1O00151 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PDLIM1O00151 ST7-AS1-201ENST00000456775 1889 ntBASIC25.18■■□□□ 1.62
PDLIM1O00151 AL031258.1-201ENST00000623562 325 ntBASIC25.18■■□□□ 1.62
PDLIM1O00151 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PDLIM1O00151 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PDLIM1O00151 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.17■■□□□ 1.62
PDLIM1O00151 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PDLIM1O00151 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.17■■□□□ 1.62
PDLIM1O00151 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PDLIM1O00151 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
PDLIM1O00151 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PDLIM1O00151 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PDLIM1O00151 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PDLIM1O00151 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PDLIM1O00151 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PDLIM1O00151 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PDLIM1O00151 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PDLIM1O00151 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.14■■□□□ 1.62
PDLIM1O00151 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
PDLIM1O00151 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PDLIM1O00151 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PDLIM1O00151 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
PDLIM1O00151 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.09■■□□□ 1.61
PDLIM1O00151 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
PDLIM1O00151 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PDLIM1O00151 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDLIM1O00151 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
PDLIM1O00151 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PDLIM1O00151 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
PDLIM1O00151 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PDLIM1O00151 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDLIM1O00151 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDLIM1O00151 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
PDLIM1O00151 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.04■■□□□ 1.6
PDLIM1O00151 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.04■■□□□ 1.6
PDLIM1O00151 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
PDLIM1O00151 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
PDLIM1O00151 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PDLIM1O00151 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC25.03■■□□□ 1.6
PDLIM1O00151 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PDLIM1O00151 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.02■■□□□ 1.6
PDLIM1O00151 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
PDLIM1O00151 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25■■□□□ 1.59
PDLIM1O00151 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25■■□□□ 1.59
PDLIM1O00151 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PDLIM1O00151 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25■■□□□ 1.59
PDLIM1O00151 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PDLIM1O00151 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PDLIM1O00151 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PDLIM1O00151 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC24.98■■□□□ 1.59
PDLIM1O00151 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.98■■□□□ 1.59
PDLIM1O00151 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PDLIM1O00151 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PDLIM1O00151 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
PDLIM1O00151 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.96■■□□□ 1.59
PDLIM1O00151 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
PDLIM1O00151 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.95■■□□□ 1.59
PDLIM1O00151 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
PDLIM1O00151 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PDLIM1O00151 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PDLIM1O00151 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
PDLIM1O00151 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PDLIM1O00151 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PDLIM1O00151 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.93■■□□□ 1.58
PDLIM1O00151 AC142086.6-201ENST00000621154 1765 ntBASIC24.93■■□□□ 1.58
PDLIM1O00151 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.92■■□□□ 1.58
PDLIM1O00151 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PDLIM1O00151 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PDLIM1O00151 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PDLIM1O00151 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PDLIM1O00151 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PDLIM1O00151 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
PDLIM1O00151 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.89■■□□□ 1.58
PDLIM1O00151 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.57
PDLIM1O00151 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PDLIM1O00151 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC24.88■■□□□ 1.57
PDLIM1O00151 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC24.88■■□□□ 1.57
PDLIM1O00151 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PDLIM1O00151 MVK-208ENST00000539696 608 ntTSL 5 BASIC24.87■■□□□ 1.57
PDLIM1O00151 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PDLIM1O00151 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PDLIM1O00151 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PDLIM1O00151 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PDLIM1O00151 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PDLIM1O00151 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
PDLIM1O00151 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
PDLIM1O00151 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.83■■□□□ 1.57
PDLIM1O00151 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24.83■■□□□ 1.57
PDLIM1O00151 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
PDLIM1O00151 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PDLIM1O00151 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PDLIM1O00151 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms