Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCSER1Q9C0I3 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCSER1Q9C0I3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.6■■■□□ 2.49
CCSER1Q9C0I3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.58■■■□□ 2.49
CCSER1Q9C0I3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCSER1Q9C0I3 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCSER1Q9C0I3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCSER1Q9C0I3 AL133380.1-201ENST00000506013 324 ntBASIC30.54■■■□□ 2.48
CCSER1Q9C0I3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CCSER1Q9C0I3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CCSER1Q9C0I3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.52■■■□□ 2.48
CCSER1Q9C0I3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CCSER1Q9C0I3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.5■■■□□ 2.47
CCSER1Q9C0I3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.5■■■□□ 2.47
CCSER1Q9C0I3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
CCSER1Q9C0I3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCSER1Q9C0I3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
CCSER1Q9C0I3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.48■■■□□ 2.47
CCSER1Q9C0I3 RARRES2P7-201ENST00000567349 469 ntBASIC30.46■■■□□ 2.47
CCSER1Q9C0I3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.45■■■□□ 2.46
CCSER1Q9C0I3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCSER1Q9C0I3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CCSER1Q9C0I3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.42■■■□□ 2.46
CCSER1Q9C0I3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CCSER1Q9C0I3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.41■■■□□ 2.46
CCSER1Q9C0I3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CCSER1Q9C0I3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CCSER1Q9C0I3 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCSER1Q9C0I3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
CCSER1Q9C0I3 WASH5P-204ENST00000632292 975 ntBASIC30.4■■■□□ 2.46
CCSER1Q9C0I3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
CCSER1Q9C0I3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCSER1Q9C0I3 SETD8P1-201ENST00000623146 1180 ntBASIC30.38■■■□□ 2.45
CCSER1Q9C0I3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CCSER1Q9C0I3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.37■■■□□ 2.45
CCSER1Q9C0I3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.36■■■□□ 2.45
CCSER1Q9C0I3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCSER1Q9C0I3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CCSER1Q9C0I3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCSER1Q9C0I3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCSER1Q9C0I3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CCSER1Q9C0I3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CCSER1Q9C0I3 AL161658.1-201ENST00000623641 1967 ntBASIC30.32■■■□□ 2.44
CCSER1Q9C0I3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
CCSER1Q9C0I3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CCSER1Q9C0I3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.29■■■□□ 2.44
CCSER1Q9C0I3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.28■■■□□ 2.44
CCSER1Q9C0I3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CCSER1Q9C0I3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CCSER1Q9C0I3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCSER1Q9C0I3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CCSER1Q9C0I3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCSER1Q9C0I3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.24■■■□□ 2.43
CCSER1Q9C0I3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCSER1Q9C0I3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCSER1Q9C0I3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCSER1Q9C0I3 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
CCSER1Q9C0I3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.21■■■□□ 2.43
CCSER1Q9C0I3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
CCSER1Q9C0I3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CCSER1Q9C0I3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCSER1Q9C0I3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
CCSER1Q9C0I3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.18■■■□□ 2.42
CCSER1Q9C0I3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCSER1Q9C0I3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCSER1Q9C0I3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
CCSER1Q9C0I3 AC136428.2-201ENST00000563187 214 ntBASIC30.16■■■□□ 2.42
CCSER1Q9C0I3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCSER1Q9C0I3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CCSER1Q9C0I3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
CCSER1Q9C0I3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CCSER1Q9C0I3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
CCSER1Q9C0I3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
CCSER1Q9C0I3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CCSER1Q9C0I3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCSER1Q9C0I3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCSER1Q9C0I3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCSER1Q9C0I3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCSER1Q9C0I3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CCSER1Q9C0I3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CCSER1Q9C0I3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
CCSER1Q9C0I3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCSER1Q9C0I3 AC097358.2-201ENST00000607541 1159 ntBASIC30.1■■■□□ 2.41
CCSER1Q9C0I3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCSER1Q9C0I3 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.1■■■□□ 2.41
CCSER1Q9C0I3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.09■■■□□ 2.41
CCSER1Q9C0I3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.08■■■□□ 2.41
CCSER1Q9C0I3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CCSER1Q9C0I3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.08■■■□□ 2.41
CCSER1Q9C0I3 CAHM-201ENST00000604200 896 ntBASIC30.08■■■□□ 2.41
CCSER1Q9C0I3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.07■■■□□ 2.4
CCSER1Q9C0I3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCSER1Q9C0I3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.07■■■□□ 2.4
CCSER1Q9C0I3 ABCB10P1-201ENST00000614297 2181 ntBASIC30.07■■■□□ 2.4
CCSER1Q9C0I3 AL391121.1-201ENST00000607967 1349 ntBASIC30.06■■■□□ 2.4
CCSER1Q9C0I3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CCSER1Q9C0I3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.05■■■□□ 2.4
CCSER1Q9C0I3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
CCSER1Q9C0I3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCSER1Q9C0I3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms