Protein–RNA interactions for Protein: Q86VN1

VPS36, Vacuolar protein-sorting-associated protein 36, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36Q86VN1 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
VPS36Q86VN1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
VPS36Q86VN1 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.1■■■□□ 2.25
VPS36Q86VN1 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
VPS36Q86VN1 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
VPS36Q86VN1 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
VPS36Q86VN1 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC29.08■■■□□ 2.25
VPS36Q86VN1 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
VPS36Q86VN1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.07■■■□□ 2.24
VPS36Q86VN1 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
VPS36Q86VN1 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
VPS36Q86VN1 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC29.04■■■□□ 2.24
VPS36Q86VN1 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.04■■■□□ 2.24
VPS36Q86VN1 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.03■■■□□ 2.24
VPS36Q86VN1 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.02■■■□□ 2.24
VPS36Q86VN1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
VPS36Q86VN1 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
VPS36Q86VN1 ABCB10P1-201ENST00000614297 2181 ntBASIC29.02■■■□□ 2.24
VPS36Q86VN1 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
VPS36Q86VN1 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
VPS36Q86VN1 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
VPS36Q86VN1 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
VPS36Q86VN1 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC28.99■■■□□ 2.23
VPS36Q86VN1 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC28.99■■■□□ 2.23
VPS36Q86VN1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
VPS36Q86VN1 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.97■■■□□ 2.23
VPS36Q86VN1 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
VPS36Q86VN1 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC28.96■■■□□ 2.23
VPS36Q86VN1 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.95■■■□□ 2.23
VPS36Q86VN1 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC28.95■■■□□ 2.22
VPS36Q86VN1 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.94■■■□□ 2.22
VPS36Q86VN1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.93■■■□□ 2.22
VPS36Q86VN1 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.92■■■□□ 2.22
VPS36Q86VN1 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
VPS36Q86VN1 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC28.91■■■□□ 2.22
VPS36Q86VN1 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.9■■■□□ 2.22
VPS36Q86VN1 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
VPS36Q86VN1 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
VPS36Q86VN1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
VPS36Q86VN1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
VPS36Q86VN1 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
VPS36Q86VN1 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC28.87■■■□□ 2.21
VPS36Q86VN1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
VPS36Q86VN1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC28.86■■■□□ 2.21
VPS36Q86VN1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.86■■■□□ 2.21
VPS36Q86VN1 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC28.86■■■□□ 2.21
VPS36Q86VN1 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
VPS36Q86VN1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC28.85■■■□□ 2.21
VPS36Q86VN1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
VPS36Q86VN1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
VPS36Q86VN1 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
VPS36Q86VN1 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
VPS36Q86VN1 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
VPS36Q86VN1 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
VPS36Q86VN1 AL161658.1-201ENST00000623641 1967 ntBASIC28.82■■■□□ 2.2
VPS36Q86VN1 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
VPS36Q86VN1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
VPS36Q86VN1 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
VPS36Q86VN1 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
VPS36Q86VN1 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
VPS36Q86VN1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC28.78■■■□□ 2.2
VPS36Q86VN1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
VPS36Q86VN1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
VPS36Q86VN1 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
VPS36Q86VN1 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC28.77■■■□□ 2.2
VPS36Q86VN1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
VPS36Q86VN1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
VPS36Q86VN1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC28.76■■■□□ 2.19
VPS36Q86VN1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
VPS36Q86VN1 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
VPS36Q86VN1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.75■■■□□ 2.19
VPS36Q86VN1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.75■■■□□ 2.19
VPS36Q86VN1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.75■■■□□ 2.19
VPS36Q86VN1 ABCB10P3-201ENST00000561950 2166 ntBASIC28.75■■■□□ 2.19
VPS36Q86VN1 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
VPS36Q86VN1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC28.74■■■□□ 2.19
VPS36Q86VN1 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
VPS36Q86VN1 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
VPS36Q86VN1 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS36Q86VN1 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS36Q86VN1 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS36Q86VN1 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
VPS36Q86VN1 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.19
VPS36Q86VN1 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
VPS36Q86VN1 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
VPS36Q86VN1 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
VPS36Q86VN1 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.68■■■□□ 2.18
VPS36Q86VN1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS36Q86VN1 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS36Q86VN1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
VPS36Q86VN1 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VPS36Q86VN1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
VPS36Q86VN1 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC28.67■■■□□ 2.18
VPS36Q86VN1 ST7-AS1-201ENST00000456775 1889 ntBASIC28.66■■■□□ 2.18
VPS36Q86VN1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
VPS36Q86VN1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
VPS36Q86VN1 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
VPS36Q86VN1 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
VPS36Q86VN1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.65■■■□□ 2.18
VPS36Q86VN1 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms