Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CDX1P47902 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CDX1P47902 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
CDX1P47902 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CDX1P47902 ABCB10P3-201ENST00000561950 2166 ntBASIC21.72■■□□□ 1.07
CDX1P47902 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX1P47902 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDX1P47902 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDX1P47902 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDX1P47902 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDX1P47902 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC21.7■■□□□ 1.06
CDX1P47902 SETD8P1-201ENST00000623146 1180 ntBASIC21.69■■□□□ 1.06
CDX1P47902 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDX1P47902 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
CDX1P47902 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.68■■□□□ 1.06
CDX1P47902 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CDX1P47902 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDX1P47902 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CDX1P47902 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDX1P47902 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.65■■□□□ 1.06
CDX1P47902 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDX1P47902 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.65■■□□□ 1.06
CDX1P47902 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC21.64■■□□□ 1.06
CDX1P47902 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CDX1P47902 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
CDX1P47902 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDX1P47902 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDX1P47902 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDX1P47902 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.63■■□□□ 1.05
CDX1P47902 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CDX1P47902 AC097358.2-201ENST00000607541 1159 ntBASIC21.63■■□□□ 1.05
CDX1P47902 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.62■■□□□ 1.05
CDX1P47902 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDX1P47902 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDX1P47902 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CDX1P47902 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CDX1P47902 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.61■■□□□ 1.05
CDX1P47902 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDX1P47902 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
CDX1P47902 ABCB10P1-201ENST00000614297 2181 ntBASIC21.6■■□□□ 1.05
CDX1P47902 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDX1P47902 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDX1P47902 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDX1P47902 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.58■■□□□ 1.04
CDX1P47902 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDX1P47902 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDX1P47902 AC136428.2-201ENST00000563187 214 ntBASIC21.55■■□□□ 1.04
CDX1P47902 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDX1P47902 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDX1P47902 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDX1P47902 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDX1P47902 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.53■■□□□ 1.04
CDX1P47902 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.53■■□□□ 1.04
CDX1P47902 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDX1P47902 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.52■■□□□ 1.04
CDX1P47902 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDX1P47902 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX1P47902 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX1P47902 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC21.51■■□□□ 1.03
CDX1P47902 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDX1P47902 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDX1P47902 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX1P47902 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.49■■□□□ 1.03
CDX1P47902 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC21.49■■□□□ 1.03
CDX1P47902 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC21.48■■□□□ 1.03
CDX1P47902 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX1P47902 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.47■■□□□ 1.03
CDX1P47902 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDX1P47902 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.47■■□□□ 1.03
CDX1P47902 AL133380.1-201ENST00000506013 324 ntBASIC21.47■■□□□ 1.03
CDX1P47902 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.46■■□□□ 1.03
CDX1P47902 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDX1P47902 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX1P47902 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX1P47902 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.45■■□□□ 1.02
CDX1P47902 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX1P47902 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.44■■□□□ 1.02
CDX1P47902 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX1P47902 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX1P47902 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDX1P47902 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
CDX1P47902 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDX1P47902 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX1P47902 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDX1P47902 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.41■■□□□ 1.02
CDX1P47902 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDX1P47902 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CDX1P47902 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.39■■□□□ 1.01
CDX1P47902 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.39■■□□□ 1.01
CDX1P47902 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDX1P47902 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDX1P47902 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.37■■□□□ 1.01
CDX1P47902 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.37■■□□□ 1.01
CDX1P47902 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CDX1P47902 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDX1P47902 SUZ12P1-203ENST00000578195 985 ntBASIC21.37■■□□□ 1.01
CDX1P47902 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CDX1P47902 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CDX1P47902 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
CDX1P47902 CAHM-201ENST00000604200 896 ntBASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms