Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL11A1P12107 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.53■■■□□ 2.64
COL11A1P12107 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL11A1P12107 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL11A1P12107 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL11A1P12107 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.48■■■□□ 2.63
COL11A1P12107 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.48■■■□□ 2.63
COL11A1P12107 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
COL11A1P12107 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
COL11A1P12107 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL11A1P12107 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.47■■■□□ 2.63
COL11A1P12107 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL11A1P12107 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.47■■■□□ 2.63
COL11A1P12107 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL11A1P12107 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL11A1P12107 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.45■■■□□ 2.63
COL11A1P12107 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL11A1P12107 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
COL11A1P12107 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL11A1P12107 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
COL11A1P12107 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
COL11A1P12107 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.42■■■□□ 2.62
COL11A1P12107 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.41■■■□□ 2.62
COL11A1P12107 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
COL11A1P12107 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL11A1P12107 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
COL11A1P12107 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL11A1P12107 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.38■■■□□ 2.61
COL11A1P12107 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
COL11A1P12107 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL11A1P12107 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
COL11A1P12107 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL11A1P12107 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
COL11A1P12107 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.36■■■□□ 2.61
COL11A1P12107 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL11A1P12107 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL11A1P12107 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.33■■■□□ 2.61
COL11A1P12107 MIR7108-201ENST00000614319 87 ntBASIC31.33■■■□□ 2.61
COL11A1P12107 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
COL11A1P12107 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL11A1P12107 ABHD17AP4-201ENST00000411545 909 ntBASIC31.31■■■□□ 2.6
COL11A1P12107 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL11A1P12107 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.31■■■□□ 2.6
COL11A1P12107 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.31■■■□□ 2.6
COL11A1P12107 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.31■■■□□ 2.6
COL11A1P12107 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL11A1P12107 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL11A1P12107 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
COL11A1P12107 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.28■■■□□ 2.6
COL11A1P12107 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL11A1P12107 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
COL11A1P12107 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.26■■■□□ 2.6
COL11A1P12107 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.26■■■□□ 2.6
COL11A1P12107 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL11A1P12107 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.25■■■□□ 2.59
COL11A1P12107 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.25■■■□□ 2.59
COL11A1P12107 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.25■■■□□ 2.59
COL11A1P12107 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL11A1P12107 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL11A1P12107 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL11A1P12107 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL11A1P12107 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
COL11A1P12107 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL11A1P12107 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.21■■■□□ 2.59
COL11A1P12107 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL11A1P12107 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.21■■■□□ 2.59
COL11A1P12107 HLA-V-202ENST00000446817 847 ntBASIC31.19■■■□□ 2.58
COL11A1P12107 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.19■■■□□ 2.58
COL11A1P12107 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.19■■■□□ 2.58
COL11A1P12107 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL11A1P12107 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL11A1P12107 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.18■■■□□ 2.58
COL11A1P12107 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL11A1P12107 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL11A1P12107 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL11A1P12107 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL11A1P12107 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL11A1P12107 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL11A1P12107 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.15■■■□□ 2.58
COL11A1P12107 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL11A1P12107 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL11A1P12107 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.14■■■□□ 2.58
COL11A1P12107 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL11A1P12107 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL11A1P12107 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL11A1P12107 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.12■■■□□ 2.57
COL11A1P12107 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL11A1P12107 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL11A1P12107 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
COL11A1P12107 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL11A1P12107 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
COL11A1P12107 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.09■■■□□ 2.57
COL11A1P12107 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.09■■■□□ 2.57
COL11A1P12107 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL11A1P12107 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
COL11A1P12107 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
COL11A1P12107 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL11A1P12107 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
COL11A1P12107 AC120057.4-201ENST00000624722 1615 ntBASIC31.07■■■□□ 2.56
COL11A1P12107 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.05■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms