Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.18■■■□□ 2.74
HMGB1P09429 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.16■■■□□ 2.74
HMGB1P09429 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
HMGB1P09429 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
HMGB1P09429 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.13■■■□□ 2.73
HMGB1P09429 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
HMGB1P09429 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC32.12■■■□□ 2.73
HMGB1P09429 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC32.12■■■□□ 2.73
HMGB1P09429 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
HMGB1P09429 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC32.11■■■□□ 2.73
HMGB1P09429 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
HMGB1P09429 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
HMGB1P09429 AL133380.1-201ENST00000506013 324 ntBASIC32.1■■■□□ 2.73
HMGB1P09429 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.07■■■□□ 2.72
HMGB1P09429 RARRES2P7-201ENST00000567349 469 ntBASIC32.07■■■□□ 2.72
HMGB1P09429 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.05■■■□□ 2.72
HMGB1P09429 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
HMGB1P09429 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
HMGB1P09429 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
HMGB1P09429 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
HMGB1P09429 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.01■■■□□ 2.71
HMGB1P09429 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC32.01■■■□□ 2.71
HMGB1P09429 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC32■■■□□ 2.71
HMGB1P09429 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
HMGB1P09429 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC32■■■□□ 2.71
HMGB1P09429 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.98■■■□□ 2.71
HMGB1P09429 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
HMGB1P09429 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.97■■■□□ 2.71
HMGB1P09429 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
HMGB1P09429 WASH5P-204ENST00000632292 975 ntBASIC31.96■■■□□ 2.71
HMGB1P09429 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
HMGB1P09429 SETD8P1-201ENST00000623146 1180 ntBASIC31.94■■■□□ 2.7
HMGB1P09429 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.93■■■□□ 2.7
HMGB1P09429 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
HMGB1P09429 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
HMGB1P09429 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.91■■■□□ 2.7
HMGB1P09429 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
HMGB1P09429 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
HMGB1P09429 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
HMGB1P09429 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
HMGB1P09429 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
HMGB1P09429 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
HMGB1P09429 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
HMGB1P09429 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.89■■■□□ 2.7
HMGB1P09429 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.87■■■□□ 2.69
HMGB1P09429 AL161658.1-201ENST00000623641 1967 ntBASIC31.87■■■□□ 2.69
HMGB1P09429 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
HMGB1P09429 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
HMGB1P09429 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
HMGB1P09429 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
HMGB1P09429 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
HMGB1P09429 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
HMGB1P09429 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
HMGB1P09429 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
HMGB1P09429 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
HMGB1P09429 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
HMGB1P09429 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.76■■■□□ 2.68
HMGB1P09429 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.76■■■□□ 2.67
HMGB1P09429 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
HMGB1P09429 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
HMGB1P09429 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
HMGB1P09429 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
HMGB1P09429 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
HMGB1P09429 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.71■■■□□ 2.67
HMGB1P09429 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
HMGB1P09429 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.7■■■□□ 2.67
HMGB1P09429 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.7■■■□□ 2.67
HMGB1P09429 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.7■■■□□ 2.67
HMGB1P09429 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
HMGB1P09429 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
HMGB1P09429 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
HMGB1P09429 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
HMGB1P09429 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.68■■■□□ 2.66
HMGB1P09429 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
HMGB1P09429 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
HMGB1P09429 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
HMGB1P09429 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
HMGB1P09429 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
HMGB1P09429 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
HMGB1P09429 AC136428.2-201ENST00000563187 214 ntBASIC31.66■■■□□ 2.66
HMGB1P09429 AC097358.2-201ENST00000607541 1159 ntBASIC31.66■■■□□ 2.66
HMGB1P09429 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
HMGB1P09429 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
HMGB1P09429 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
HMGB1P09429 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
HMGB1P09429 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.64■■■□□ 2.66
HMGB1P09429 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.64■■■□□ 2.66
HMGB1P09429 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.63■■■□□ 2.65
HMGB1P09429 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.63■■■□□ 2.65
HMGB1P09429 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
HMGB1P09429 AL391121.1-201ENST00000607967 1349 ntBASIC31.6■■■□□ 2.65
HMGB1P09429 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.6■■■□□ 2.65
HMGB1P09429 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
HMGB1P09429 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
HMGB1P09429 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.65
HMGB1P09429 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
HMGB1P09429 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.58■■■□□ 2.65
HMGB1P09429 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.57■■■□□ 2.64
HMGB1P09429 CAHM-201ENST00000604200 896 ntBASIC31.57■■■□□ 2.64
HMGB1P09429 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.57■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms