Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.92■■■□□ 2.54
PGK1P00558 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.91■■■□□ 2.54
PGK1P00558 ZNRF2P2-203ENST00000454624 420 ntBASIC30.9■■■□□ 2.54
PGK1P00558 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
PGK1P00558 WASH5P-204ENST00000632292 975 ntBASIC30.87■■■□□ 2.53
PGK1P00558 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.84■■■□□ 2.53
PGK1P00558 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.83■■■□□ 2.53
PGK1P00558 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
PGK1P00558 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.82■■■□□ 2.53
PGK1P00558 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
PGK1P00558 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
PGK1P00558 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.82■■■□□ 2.52
PGK1P00558 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
PGK1P00558 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
PGK1P00558 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
PGK1P00558 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.8■■■□□ 2.52
PGK1P00558 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
PGK1P00558 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.79■■■□□ 2.52
PGK1P00558 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.78■■■□□ 2.52
PGK1P00558 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.77■■■□□ 2.52
PGK1P00558 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
PGK1P00558 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.76■■■□□ 2.51
PGK1P00558 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
PGK1P00558 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
PGK1P00558 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
PGK1P00558 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
PGK1P00558 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
PGK1P00558 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.72■■■□□ 2.51
PGK1P00558 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
PGK1P00558 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.72■■■□□ 2.51
PGK1P00558 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
PGK1P00558 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
PGK1P00558 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.7■■■□□ 2.51
PGK1P00558 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
PGK1P00558 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.69■■■□□ 2.5
PGK1P00558 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.69■■■□□ 2.5
PGK1P00558 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
PGK1P00558 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PGK1P00558 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PGK1P00558 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
PGK1P00558 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
PGK1P00558 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
PGK1P00558 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.65■■■□□ 2.5
PGK1P00558 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
PGK1P00558 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.63■■■□□ 2.49
PGK1P00558 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
PGK1P00558 DUX4L29-201ENST00000425409 679 ntBASIC30.62■■■□□ 2.49
PGK1P00558 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.62■■■□□ 2.49
PGK1P00558 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
PGK1P00558 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
PGK1P00558 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.61■■■□□ 2.49
PGK1P00558 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
PGK1P00558 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
PGK1P00558 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
PGK1P00558 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.58■■■□□ 2.49
PGK1P00558 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
PGK1P00558 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
PGK1P00558 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.56■■■□□ 2.48
PGK1P00558 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
PGK1P00558 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
PGK1P00558 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.54■■■□□ 2.48
PGK1P00558 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.52■■■□□ 2.48
PGK1P00558 AC021231.2-201ENST00000594613 730 ntBASIC30.52■■■□□ 2.48
PGK1P00558 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.52■■■□□ 2.48
PGK1P00558 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
PGK1P00558 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
PGK1P00558 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
PGK1P00558 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
PGK1P00558 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
PGK1P00558 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
PGK1P00558 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
PGK1P00558 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
PGK1P00558 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
PGK1P00558 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.45■■■□□ 2.47
PGK1P00558 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.44■■■□□ 2.46
PGK1P00558 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
PGK1P00558 MIR4449-201ENST00000578365 66 ntBASIC30.42■■■□□ 2.46
PGK1P00558 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.41■■■□□ 2.46
PGK1P00558 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
PGK1P00558 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
PGK1P00558 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
PGK1P00558 MIR639-201ENST00000384974 98 ntBASIC30.38■■■□□ 2.45
PGK1P00558 MIR6090-201ENST00000622481 60 ntBASIC30.38■■■□□ 2.45
PGK1P00558 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.37■■■□□ 2.45
PGK1P00558 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
PGK1P00558 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
PGK1P00558 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
PGK1P00558 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.36■■■□□ 2.45
PGK1P00558 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.36■■■□□ 2.45
PGK1P00558 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
PGK1P00558 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.35■■■□□ 2.45
PGK1P00558 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.35■■■□□ 2.45
PGK1P00558 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
PGK1P00558 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
PGK1P00558 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.33■■■□□ 2.45
PGK1P00558 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
PGK1P00558 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.32■■■□□ 2.45
PGK1P00558 AC108673.1-201ENST00000510422 1159 ntBASIC30.32■■■□□ 2.44
PGK1P00558 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.32■■■□□ 2.44
PGK1P00558 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms