Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
PDLIM1O00151 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
PDLIM1O00151 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PDLIM1O00151 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.66■■□□□ 1.7
PDLIM1O00151 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
PDLIM1O00151 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC25.65■■□□□ 1.7
PDLIM1O00151 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PDLIM1O00151 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.65■■□□□ 1.7
PDLIM1O00151 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
PDLIM1O00151 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
PDLIM1O00151 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PDLIM1O00151 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.62■■□□□ 1.69
PDLIM1O00151 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PDLIM1O00151 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PDLIM1O00151 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
PDLIM1O00151 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.6■■□□□ 1.69
PDLIM1O00151 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC25.59■■□□□ 1.69
PDLIM1O00151 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
PDLIM1O00151 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.58■■□□□ 1.69
PDLIM1O00151 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
PDLIM1O00151 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC25.56■■□□□ 1.68
PDLIM1O00151 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.56■■□□□ 1.68
PDLIM1O00151 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.55■■□□□ 1.68
PDLIM1O00151 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PDLIM1O00151 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC25.55■■□□□ 1.68
PDLIM1O00151 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.55■■□□□ 1.68
PDLIM1O00151 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PDLIM1O00151 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PDLIM1O00151 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PDLIM1O00151 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.52■■□□□ 1.68
PDLIM1O00151 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
PDLIM1O00151 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
PDLIM1O00151 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
PDLIM1O00151 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PDLIM1O00151 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
PDLIM1O00151 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PDLIM1O00151 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
PDLIM1O00151 AP002365.1-201ENST00000603448 772 ntBASIC25.49■■□□□ 1.67
PDLIM1O00151 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PDLIM1O00151 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PDLIM1O00151 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
PDLIM1O00151 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PDLIM1O00151 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
PDLIM1O00151 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.44■■□□□ 1.66
PDLIM1O00151 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PDLIM1O00151 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC25.41■■□□□ 1.66
PDLIM1O00151 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC25.41■■□□□ 1.66
PDLIM1O00151 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PDLIM1O00151 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
PDLIM1O00151 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
PDLIM1O00151 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
PDLIM1O00151 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PDLIM1O00151 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
PDLIM1O00151 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
PDLIM1O00151 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
PDLIM1O00151 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
PDLIM1O00151 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
PDLIM1O00151 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PDLIM1O00151 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.36■■□□□ 1.65
PDLIM1O00151 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PDLIM1O00151 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC25.35■■□□□ 1.65
PDLIM1O00151 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
PDLIM1O00151 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
PDLIM1O00151 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
PDLIM1O00151 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25.35■■□□□ 1.65
PDLIM1O00151 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.34■■□□□ 1.65
PDLIM1O00151 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PDLIM1O00151 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
PDLIM1O00151 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PDLIM1O00151 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PDLIM1O00151 DYNLL1-208ENST00000550178 581 ntBASIC25.33■■□□□ 1.65
PDLIM1O00151 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
PDLIM1O00151 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
PDLIM1O00151 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC25.32■■□□□ 1.64
PDLIM1O00151 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.32■■□□□ 1.64
PDLIM1O00151 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PDLIM1O00151 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PDLIM1O00151 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PDLIM1O00151 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PDLIM1O00151 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
PDLIM1O00151 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PDLIM1O00151 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
PDLIM1O00151 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PDLIM1O00151 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PDLIM1O00151 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
PDLIM1O00151 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.28■■□□□ 1.64
PDLIM1O00151 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PDLIM1O00151 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC25.27■■□□□ 1.64
PDLIM1O00151 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PDLIM1O00151 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PDLIM1O00151 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC25.25■■□□□ 1.63
PDLIM1O00151 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PDLIM1O00151 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PDLIM1O00151 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.25■■□□□ 1.63
PDLIM1O00151 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC25.24■■□□□ 1.63
PDLIM1O00151 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PDLIM1O00151 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PDLIM1O00151 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PDLIM1O00151 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.21■■□□□ 1.63
PDLIM1O00151 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms