Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC187A0A096LP49 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.19■■□□□ 1.78
CCDC187A0A096LP49 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.19■■□□□ 1.78
CCDC187A0A096LP49 HLA-V-202ENST00000446817 847 ntBASIC26.18■■□□□ 1.78
CCDC187A0A096LP49 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.18■■□□□ 1.78
CCDC187A0A096LP49 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.16■■□□□ 1.78
CCDC187A0A096LP49 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CCDC187A0A096LP49 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
CCDC187A0A096LP49 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC187A0A096LP49 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.14■■□□□ 1.78
CCDC187A0A096LP49 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26.13■■□□□ 1.77
CCDC187A0A096LP49 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC187A0A096LP49 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.12■■□□□ 1.77
CCDC187A0A096LP49 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.12■■□□□ 1.77
CCDC187A0A096LP49 ZNRF2P2-203ENST00000454624 420 ntBASIC26.11■■□□□ 1.77
CCDC187A0A096LP49 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CCDC187A0A096LP49 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CCDC187A0A096LP49 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC187A0A096LP49 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC187A0A096LP49 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC187A0A096LP49 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC187A0A096LP49 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC187A0A096LP49 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
CCDC187A0A096LP49 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC187A0A096LP49 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC187A0A096LP49 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC187A0A096LP49 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.03■■□□□ 1.76
CCDC187A0A096LP49 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC187A0A096LP49 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC187A0A096LP49 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC187A0A096LP49 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC187A0A096LP49 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.01■■□□□ 1.75
CCDC187A0A096LP49 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC187A0A096LP49 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26■■□□□ 1.75
CCDC187A0A096LP49 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC187A0A096LP49 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC187A0A096LP49 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
CCDC187A0A096LP49 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC187A0A096LP49 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.98■■□□□ 1.75
CCDC187A0A096LP49 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.98■■□□□ 1.75
CCDC187A0A096LP49 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC187A0A096LP49 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC187A0A096LP49 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.97■■□□□ 1.75
CCDC187A0A096LP49 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC187A0A096LP49 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.97■■□□□ 1.75
CCDC187A0A096LP49 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC25.96■■□□□ 1.75
CCDC187A0A096LP49 DUX4L29-201ENST00000425409 679 ntBASIC25.96■■□□□ 1.75
CCDC187A0A096LP49 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC187A0A096LP49 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.95■■□□□ 1.75
CCDC187A0A096LP49 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC187A0A096LP49 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.94■■□□□ 1.74
CCDC187A0A096LP49 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC187A0A096LP49 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC187A0A096LP49 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC187A0A096LP49 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.93■■□□□ 1.74
CCDC187A0A096LP49 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC187A0A096LP49 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC187A0A096LP49 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
CCDC187A0A096LP49 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC187A0A096LP49 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC187A0A096LP49 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
CCDC187A0A096LP49 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.88■■□□□ 1.73
CCDC187A0A096LP49 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.88■■□□□ 1.73
CCDC187A0A096LP49 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC187A0A096LP49 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC187A0A096LP49 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC187A0A096LP49 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC187A0A096LP49 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC187A0A096LP49 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
CCDC187A0A096LP49 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.83■■□□□ 1.73
CCDC187A0A096LP49 AC021231.2-201ENST00000594613 730 ntBASIC25.82■■□□□ 1.72
CCDC187A0A096LP49 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC187A0A096LP49 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.81■■□□□ 1.72
CCDC187A0A096LP49 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.8■■□□□ 1.72
CCDC187A0A096LP49 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.8■■□□□ 1.72
CCDC187A0A096LP49 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC187A0A096LP49 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC187A0A096LP49 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC187A0A096LP49 AC108673.1-201ENST00000510422 1159 ntBASIC25.78■■□□□ 1.72
CCDC187A0A096LP49 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC187A0A096LP49 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC187A0A096LP49 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC187A0A096LP49 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC25.77■■□□□ 1.72
CCDC187A0A096LP49 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC187A0A096LP49 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.76■■□□□ 1.71
CCDC187A0A096LP49 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.76■■□□□ 1.71
CCDC187A0A096LP49 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC187A0A096LP49 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC187A0A096LP49 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.75■■□□□ 1.71
CCDC187A0A096LP49 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.75■■□□□ 1.71
CCDC187A0A096LP49 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC187A0A096LP49 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.73■■□□□ 1.71
CCDC187A0A096LP49 MIR4449-201ENST00000578365 66 ntBASIC25.72■■□□□ 1.71
CCDC187A0A096LP49 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC187A0A096LP49 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.72■■□□□ 1.71
CCDC187A0A096LP49 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
CCDC187A0A096LP49 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC187A0A096LP49 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.71■■□□□ 1.71
CCDC187A0A096LP49 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC187A0A096LP49 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms