Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 MVK-208ENST00000539696 608 ntTSL 5 BASIC24.73■■□□□ 1.55
SEC61A2Q9H9S3 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SEC61A2Q9H9S3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.7■■□□□ 1.55
SEC61A2Q9H9S3 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
SEC61A2Q9H9S3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC24.7■■□□□ 1.54
SEC61A2Q9H9S3 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SEC61A2Q9H9S3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC24.67■■□□□ 1.54
SEC61A2Q9H9S3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
SEC61A2Q9H9S3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SEC61A2Q9H9S3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
SEC61A2Q9H9S3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
SEC61A2Q9H9S3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SEC61A2Q9H9S3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC24.64■■□□□ 1.54
SEC61A2Q9H9S3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.63■■□□□ 1.53
SEC61A2Q9H9S3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC24.63■■□□□ 1.53
SEC61A2Q9H9S3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC24.63■■□□□ 1.53
SEC61A2Q9H9S3 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
SEC61A2Q9H9S3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
SEC61A2Q9H9S3 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
SEC61A2Q9H9S3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC24.6■■□□□ 1.53
SEC61A2Q9H9S3 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SEC61A2Q9H9S3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SEC61A2Q9H9S3 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SEC61A2Q9H9S3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SEC61A2Q9H9S3 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SEC61A2Q9H9S3 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
SEC61A2Q9H9S3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
SEC61A2Q9H9S3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.54■■□□□ 1.52
SEC61A2Q9H9S3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC24.53■■□□□ 1.52
SEC61A2Q9H9S3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SEC61A2Q9H9S3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.52■■□□□ 1.52
SEC61A2Q9H9S3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SEC61A2Q9H9S3 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
SEC61A2Q9H9S3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SEC61A2Q9H9S3 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC24.5■■□□□ 1.51
SEC61A2Q9H9S3 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
SEC61A2Q9H9S3 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SEC61A2Q9H9S3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SEC61A2Q9H9S3 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
SEC61A2Q9H9S3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24.48■■□□□ 1.51
SEC61A2Q9H9S3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SEC61A2Q9H9S3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SEC61A2Q9H9S3 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
SEC61A2Q9H9S3 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SEC61A2Q9H9S3 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
SEC61A2Q9H9S3 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SEC61A2Q9H9S3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.44■■□□□ 1.5
SEC61A2Q9H9S3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC24.43■■□□□ 1.5
SEC61A2Q9H9S3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SEC61A2Q9H9S3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SEC61A2Q9H9S3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC24.4■■□□□ 1.5
SEC61A2Q9H9S3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC24.38■■□□□ 1.49
SEC61A2Q9H9S3 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
SEC61A2Q9H9S3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SEC61A2Q9H9S3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.37■■□□□ 1.49
SEC61A2Q9H9S3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SEC61A2Q9H9S3 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SEC61A2Q9H9S3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
SEC61A2Q9H9S3 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
SEC61A2Q9H9S3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC24.36■■□□□ 1.49
SEC61A2Q9H9S3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC24.35■■□□□ 1.49
SEC61A2Q9H9S3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SEC61A2Q9H9S3 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SEC61A2Q9H9S3 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SEC61A2Q9H9S3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC24.34■■□□□ 1.49
SEC61A2Q9H9S3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC24.34■■□□□ 1.49
SEC61A2Q9H9S3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
SEC61A2Q9H9S3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SEC61A2Q9H9S3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC24.33■■□□□ 1.49
SEC61A2Q9H9S3 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC24.33■■□□□ 1.49
SEC61A2Q9H9S3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
SEC61A2Q9H9S3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC24.31■■□□□ 1.48
SEC61A2Q9H9S3 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC24.3■■□□□ 1.48
SEC61A2Q9H9S3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SEC61A2Q9H9S3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC24.3■■□□□ 1.48
SEC61A2Q9H9S3 AC120057.4-201ENST00000624722 1615 ntBASIC24.3■■□□□ 1.48
SEC61A2Q9H9S3 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
SEC61A2Q9H9S3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SEC61A2Q9H9S3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SEC61A2Q9H9S3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SEC61A2Q9H9S3 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SEC61A2Q9H9S3 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SEC61A2Q9H9S3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
SEC61A2Q9H9S3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC24.27■■□□□ 1.48
SEC61A2Q9H9S3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC24.27■■□□□ 1.48
SEC61A2Q9H9S3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC24.27■■□□□ 1.48
SEC61A2Q9H9S3 RARRES2P7-201ENST00000567349 469 ntBASIC24.25■■□□□ 1.47
SEC61A2Q9H9S3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SEC61A2Q9H9S3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC24.24■■□□□ 1.47
SEC61A2Q9H9S3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC24.24■■□□□ 1.47
SEC61A2Q9H9S3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
SEC61A2Q9H9S3 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SEC61A2Q9H9S3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SEC61A2Q9H9S3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.21■■□□□ 1.47
SEC61A2Q9H9S3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SEC61A2Q9H9S3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SEC61A2Q9H9S3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SEC61A2Q9H9S3 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SEC61A2Q9H9S3 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SEC61A2Q9H9S3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms