Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTCHD1Q96NR3 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
PTCHD1Q96NR3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PTCHD1Q96NR3 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PTCHD1Q96NR3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.14■■□□□ 1.78
PTCHD1Q96NR3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
PTCHD1Q96NR3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.13■■□□□ 1.77
PTCHD1Q96NR3 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PTCHD1Q96NR3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PTCHD1Q96NR3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.08■■□□□ 1.77
PTCHD1Q96NR3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTCHD1Q96NR3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
PTCHD1Q96NR3 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PTCHD1Q96NR3 SETD8P1-201ENST00000623146 1180 ntBASIC26.06■■□□□ 1.76
PTCHD1Q96NR3 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
PTCHD1Q96NR3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.05■■□□□ 1.76
PTCHD1Q96NR3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.05■■□□□ 1.76
PTCHD1Q96NR3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PTCHD1Q96NR3 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCHD1Q96NR3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PTCHD1Q96NR3 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCHD1Q96NR3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26■■□□□ 1.75
PTCHD1Q96NR3 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC25.99■■□□□ 1.75
PTCHD1Q96NR3 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
PTCHD1Q96NR3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PTCHD1Q96NR3 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PTCHD1Q96NR3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.98■■□□□ 1.75
PTCHD1Q96NR3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
PTCHD1Q96NR3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
PTCHD1Q96NR3 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC25.96■■□□□ 1.75
PTCHD1Q96NR3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.96■■□□□ 1.75
PTCHD1Q96NR3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
PTCHD1Q96NR3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
PTCHD1Q96NR3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.94■■□□□ 1.74
PTCHD1Q96NR3 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
PTCHD1Q96NR3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
PTCHD1Q96NR3 AC097358.2-201ENST00000607541 1159 ntBASIC25.94■■□□□ 1.74
PTCHD1Q96NR3 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
PTCHD1Q96NR3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.93■■□□□ 1.74
PTCHD1Q96NR3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.93■■□□□ 1.74
PTCHD1Q96NR3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
PTCHD1Q96NR3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.91■■□□□ 1.74
PTCHD1Q96NR3 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC25.9■■□□□ 1.74
PTCHD1Q96NR3 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC25.89■■□□□ 1.74
PTCHD1Q96NR3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
PTCHD1Q96NR3 AL133380.1-201ENST00000506013 324 ntBASIC25.88■■□□□ 1.73
PTCHD1Q96NR3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
PTCHD1Q96NR3 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
PTCHD1Q96NR3 AC136428.2-201ENST00000563187 214 ntBASIC25.86■■□□□ 1.73
PTCHD1Q96NR3 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
PTCHD1Q96NR3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.85■■□□□ 1.73
PTCHD1Q96NR3 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.84■■□□□ 1.73
PTCHD1Q96NR3 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PTCHD1Q96NR3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.83■■□□□ 1.73
PTCHD1Q96NR3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.83■■□□□ 1.73
PTCHD1Q96NR3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC25.83■■□□□ 1.73
PTCHD1Q96NR3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
PTCHD1Q96NR3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
PTCHD1Q96NR3 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PTCHD1Q96NR3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PTCHD1Q96NR3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.8■■□□□ 1.72
PTCHD1Q96NR3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC25.8■■□□□ 1.72
PTCHD1Q96NR3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.79■■□□□ 1.72
PTCHD1Q96NR3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC25.78■■□□□ 1.72
PTCHD1Q96NR3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.77■■□□□ 1.72
PTCHD1Q96NR3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
PTCHD1Q96NR3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PTCHD1Q96NR3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
PTCHD1Q96NR3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PTCHD1Q96NR3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PTCHD1Q96NR3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PTCHD1Q96NR3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PTCHD1Q96NR3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.74■■□□□ 1.71
PTCHD1Q96NR3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.73■■□□□ 1.71
PTCHD1Q96NR3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.73■■□□□ 1.71
PTCHD1Q96NR3 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
PTCHD1Q96NR3 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PTCHD1Q96NR3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC25.71■■□□□ 1.71
PTCHD1Q96NR3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PTCHD1Q96NR3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PTCHD1Q96NR3 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PTCHD1Q96NR3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PTCHD1Q96NR3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PTCHD1Q96NR3 CAHM-201ENST00000604200 896 ntBASIC25.67■■□□□ 1.7
PTCHD1Q96NR3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PTCHD1Q96NR3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC25.65■■□□□ 1.7
PTCHD1Q96NR3 AL391121.1-201ENST00000607967 1349 ntBASIC25.64■■□□□ 1.7
PTCHD1Q96NR3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
PTCHD1Q96NR3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC25.63■■□□□ 1.69
PTCHD1Q96NR3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PTCHD1Q96NR3 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
PTCHD1Q96NR3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC25.62■■□□□ 1.69
PTCHD1Q96NR3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PTCHD1Q96NR3 SUZ12P1-203ENST00000578195 985 ntBASIC25.61■■□□□ 1.69
PTCHD1Q96NR3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PTCHD1Q96NR3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.61■■□□□ 1.69
PTCHD1Q96NR3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.59■■□□□ 1.69
PTCHD1Q96NR3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PTCHD1Q96NR3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PTCHD1Q96NR3 AC120057.4-201ENST00000624722 1615 ntBASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms