Protein–RNA interactions for Protein: Q7Z7G8

VPS13B, Vacuolar protein sorting-associated protein 13B, humanhuman

Predictions only

Length 4,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13BQ7Z7G8 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13BQ7Z7G8 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13BQ7Z7G8 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VPS13BQ7Z7G8 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13BQ7Z7G8 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VPS13BQ7Z7G8 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VPS13BQ7Z7G8 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13BQ7Z7G8 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS13BQ7Z7G8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC17.58■□□□□ 0.41
VPS13BQ7Z7G8 MIR7108-201ENST00000614319 87 ntBASIC17.58■□□□□ 0.4
VPS13BQ7Z7G8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13BQ7Z7G8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13BQ7Z7G8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS13BQ7Z7G8 DUX4L28-201ENST00000623687 678 ntBASIC17.56■□□□□ 0.4
VPS13BQ7Z7G8 MIR3665-201ENST00000578708 105 ntBASIC17.56■□□□□ 0.4
VPS13BQ7Z7G8 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13BQ7Z7G8 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13BQ7Z7G8 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS13BQ7Z7G8 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS13BQ7Z7G8 AC087741.3-201ENST00000624270 1347 ntBASIC17.53■□□□□ 0.4
VPS13BQ7Z7G8 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS13BQ7Z7G8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13BQ7Z7G8 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS13BQ7Z7G8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC17.52■□□□□ 0.39
VPS13BQ7Z7G8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13BQ7Z7G8 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
VPS13BQ7Z7G8 MBP-237ENST00000579129 1052 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13BQ7Z7G8 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13BQ7Z7G8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13BQ7Z7G8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS13BQ7Z7G8 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13BQ7Z7G8 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS13BQ7Z7G8 AL133380.1-201ENST00000506013 324 ntBASIC17.45■□□□□ 0.38
VPS13BQ7Z7G8 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS13BQ7Z7G8 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS13BQ7Z7G8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13BQ7Z7G8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC17.44■□□□□ 0.38
VPS13BQ7Z7G8 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
VPS13BQ7Z7G8 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13BQ7Z7G8 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS13BQ7Z7G8 EBPL-202ENST00000378268 680 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS13BQ7Z7G8 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13BQ7Z7G8 MIR762-201ENST00000390236 83 ntBASIC17.42■□□□□ 0.38
VPS13BQ7Z7G8 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13BQ7Z7G8 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13BQ7Z7G8 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13BQ7Z7G8 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
VPS13BQ7Z7G8 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13BQ7Z7G8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS13BQ7Z7G8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS13BQ7Z7G8 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VPS13BQ7Z7G8 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13BQ7Z7G8 RPS2-202ENST00000526522 924 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS13BQ7Z7G8 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VPS13BQ7Z7G8 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13BQ7Z7G8 MVK-208ENST00000539696 608 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS13BQ7Z7G8 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13BQ7Z7G8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13BQ7Z7G8 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13BQ7Z7G8 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS13BQ7Z7G8 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS13BQ7Z7G8 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS13BQ7Z7G8 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC17.34■□□□□ 0.37
VPS13BQ7Z7G8 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
VPS13BQ7Z7G8 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
VPS13BQ7Z7G8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13BQ7Z7G8 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS13BQ7Z7G8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13BQ7Z7G8 AC044849.2-201ENST00000606596 710 ntBASIC17.31■□□□□ 0.36
VPS13BQ7Z7G8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
VPS13BQ7Z7G8 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS13BQ7Z7G8 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS13BQ7Z7G8 AC005559.1-201ENST00000589661 871 ntBASIC17.3■□□□□ 0.36
VPS13BQ7Z7G8 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13BQ7Z7G8 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13BQ7Z7G8 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS13BQ7Z7G8 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13BQ7Z7G8 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS13BQ7Z7G8 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
VPS13BQ7Z7G8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13BQ7Z7G8 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
VPS13BQ7Z7G8 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13BQ7Z7G8 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13BQ7Z7G8 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS13BQ7Z7G8 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13BQ7Z7G8 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13BQ7Z7G8 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13BQ7Z7G8 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13BQ7Z7G8 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13BQ7Z7G8 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13BQ7Z7G8 CHML-205ENST00000638160 705 ntTSL 3 BASIC17.23■□□□□ 0.35
VPS13BQ7Z7G8 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS13BQ7Z7G8 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS13BQ7Z7G8 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13BQ7Z7G8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS13BQ7Z7G8 HSD17B1P1-201ENST00000590052 955 ntBASIC17.2■□□□□ 0.34
VPS13BQ7Z7G8 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VPS13BQ7Z7G8 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13BQ7Z7G8 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS13BQ7Z7G8 MIR4449-201ENST00000578365 66 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms