Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC32.09■■■□□ 2.73
SH3RF1Q7Z6J0 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
SH3RF1Q7Z6J0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.06■■■□□ 2.72
SH3RF1Q7Z6J0 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
SH3RF1Q7Z6J0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.05■■■□□ 2.72
SH3RF1Q7Z6J0 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
SH3RF1Q7Z6J0 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC32.03■■■□□ 2.72
SH3RF1Q7Z6J0 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SH3RF1Q7Z6J0 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC32.02■■■□□ 2.72
SH3RF1Q7Z6J0 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.71
SH3RF1Q7Z6J0 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SH3RF1Q7Z6J0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.97■■■□□ 2.71
SH3RF1Q7Z6J0 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SH3RF1Q7Z6J0 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SH3RF1Q7Z6J0 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
SH3RF1Q7Z6J0 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.95■■■□□ 2.71
SH3RF1Q7Z6J0 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.95■■■□□ 2.7
SH3RF1Q7Z6J0 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.92■■■□□ 2.7
SH3RF1Q7Z6J0 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.9■■■□□ 2.7
SH3RF1Q7Z6J0 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
SH3RF1Q7Z6J0 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.88■■■□□ 2.69
SH3RF1Q7Z6J0 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.88■■■□□ 2.69
SH3RF1Q7Z6J0 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.87■■■□□ 2.69
SH3RF1Q7Z6J0 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SH3RF1Q7Z6J0 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.84■■■□□ 2.69
SH3RF1Q7Z6J0 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SH3RF1Q7Z6J0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.83■■■□□ 2.69
SH3RF1Q7Z6J0 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.81■■■□□ 2.68
SH3RF1Q7Z6J0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SH3RF1Q7Z6J0 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
SH3RF1Q7Z6J0 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SH3RF1Q7Z6J0 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.79■■■□□ 2.68
SH3RF1Q7Z6J0 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SH3RF1Q7Z6J0 CAHM-201ENST00000604200 896 ntBASIC31.77■■■□□ 2.68
SH3RF1Q7Z6J0 AL162393.1-201ENST00000437852 946 ntBASIC31.75■■■□□ 2.67
SH3RF1Q7Z6J0 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.74■■■□□ 2.67
SH3RF1Q7Z6J0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
SH3RF1Q7Z6J0 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SH3RF1Q7Z6J0 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SH3RF1Q7Z6J0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.72■■■□□ 2.67
SH3RF1Q7Z6J0 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SH3RF1Q7Z6J0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SH3RF1Q7Z6J0 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.71■■■□□ 2.67
SH3RF1Q7Z6J0 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SH3RF1Q7Z6J0 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.67
SH3RF1Q7Z6J0 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.66
SH3RF1Q7Z6J0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SH3RF1Q7Z6J0 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SH3RF1Q7Z6J0 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.68■■■□□ 2.66
SH3RF1Q7Z6J0 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SH3RF1Q7Z6J0 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SH3RF1Q7Z6J0 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SH3RF1Q7Z6J0 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SH3RF1Q7Z6J0 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.65■■■□□ 2.66
SH3RF1Q7Z6J0 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SH3RF1Q7Z6J0 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SH3RF1Q7Z6J0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.61■■■□□ 2.65
SH3RF1Q7Z6J0 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
SH3RF1Q7Z6J0 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SH3RF1Q7Z6J0 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
SH3RF1Q7Z6J0 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.58■■■□□ 2.65
SH3RF1Q7Z6J0 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SH3RF1Q7Z6J0 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
SH3RF1Q7Z6J0 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
SH3RF1Q7Z6J0 AP006261.1-201ENST00000584783 668 ntBASIC31.54■■■□□ 2.64
SH3RF1Q7Z6J0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
SH3RF1Q7Z6J0 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SH3RF1Q7Z6J0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SH3RF1Q7Z6J0 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SH3RF1Q7Z6J0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.52■■■□□ 2.64
SH3RF1Q7Z6J0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SH3RF1Q7Z6J0 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.52■■■□□ 2.64
SH3RF1Q7Z6J0 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.64
SH3RF1Q7Z6J0 AL391121.1-201ENST00000607967 1349 ntBASIC31.51■■■□□ 2.64
SH3RF1Q7Z6J0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
SH3RF1Q7Z6J0 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SH3RF1Q7Z6J0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.5■■■□□ 2.63
SH3RF1Q7Z6J0 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
SH3RF1Q7Z6J0 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SH3RF1Q7Z6J0 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SH3RF1Q7Z6J0 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.44■■■□□ 2.62
SH3RF1Q7Z6J0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
SH3RF1Q7Z6J0 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SH3RF1Q7Z6J0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.41■■■□□ 2.62
SH3RF1Q7Z6J0 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.4■■■□□ 2.62
SH3RF1Q7Z6J0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.4■■■□□ 2.62
SH3RF1Q7Z6J0 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
SH3RF1Q7Z6J0 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.39■■■□□ 2.62
SH3RF1Q7Z6J0 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SH3RF1Q7Z6J0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
SH3RF1Q7Z6J0 MIR7108-201ENST00000614319 87 ntBASIC31.38■■■□□ 2.61
SH3RF1Q7Z6J0 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.38■■■□□ 2.61
SH3RF1Q7Z6J0 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.36■■■□□ 2.61
SH3RF1Q7Z6J0 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SH3RF1Q7Z6J0 ABHD17AP4-201ENST00000411545 909 ntBASIC31.36■■■□□ 2.61
SH3RF1Q7Z6J0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
SH3RF1Q7Z6J0 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.35■■■□□ 2.61
SH3RF1Q7Z6J0 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.35■■■□□ 2.61
SH3RF1Q7Z6J0 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SH3RF1Q7Z6J0 AL133380.1-201ENST00000506013 324 ntBASIC31.35■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms