Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS13CQ709C8 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VPS13CQ709C8 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
VPS13CQ709C8 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC23.83■■□□□ 1.41
VPS13CQ709C8 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC23.81■■□□□ 1.4
VPS13CQ709C8 HLA-V-202ENST00000446817 847 ntBASIC23.81■■□□□ 1.4
VPS13CQ709C8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS13CQ709C8 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
VPS13CQ709C8 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS13CQ709C8 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS13CQ709C8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VPS13CQ709C8 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.78■■□□□ 1.4
VPS13CQ709C8 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS13CQ709C8 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS13CQ709C8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS13CQ709C8 MIR7108-201ENST00000614319 87 ntBASIC23.75■■□□□ 1.39
VPS13CQ709C8 AC087741.3-201ENST00000624270 1347 ntBASIC23.74■■□□□ 1.39
VPS13CQ709C8 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS13CQ709C8 DUX4L28-201ENST00000623687 678 ntBASIC23.72■■□□□ 1.39
VPS13CQ709C8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS13CQ709C8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.71■■□□□ 1.39
VPS13CQ709C8 MIR3665-201ENST00000578708 105 ntBASIC23.68■■□□□ 1.38
VPS13CQ709C8 AL133380.1-201ENST00000506013 324 ntBASIC23.67■■□□□ 1.38
VPS13CQ709C8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.67■■□□□ 1.38
VPS13CQ709C8 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.65■■□□□ 1.38
VPS13CQ709C8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
VPS13CQ709C8 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
VPS13CQ709C8 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
VPS13CQ709C8 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.62■■□□□ 1.37
VPS13CQ709C8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
VPS13CQ709C8 ILK-212ENST00000532063 1617 ntTSL 2 BASIC23.61■■□□□ 1.37
VPS13CQ709C8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.61■■□□□ 1.37
VPS13CQ709C8 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS13CQ709C8 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.59■■□□□ 1.37
VPS13CQ709C8 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.57■■□□□ 1.36
VPS13CQ709C8 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.57■■□□□ 1.36
VPS13CQ709C8 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
VPS13CQ709C8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.57■■□□□ 1.36
VPS13CQ709C8 MVK-208ENST00000539696 608 ntTSL 5 BASIC23.56■■□□□ 1.36
VPS13CQ709C8 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.55■■□□□ 1.36
VPS13CQ709C8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.55■■□□□ 1.36
VPS13CQ709C8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
VPS13CQ709C8 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.55■■□□□ 1.36
VPS13CQ709C8 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.55■■□□□ 1.36
VPS13CQ709C8 MIR762-201ENST00000390236 83 ntBASIC23.55■■□□□ 1.36
VPS13CQ709C8 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
VPS13CQ709C8 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
VPS13CQ709C8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS13CQ709C8 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS13CQ709C8 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS13CQ709C8 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS13CQ709C8 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.48■■□□□ 1.35
VPS13CQ709C8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
VPS13CQ709C8 AC044849.2-201ENST00000606596 710 ntBASIC23.46■■□□□ 1.35
VPS13CQ709C8 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
VPS13CQ709C8 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
VPS13CQ709C8 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
VPS13CQ709C8 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.45■■□□□ 1.34
VPS13CQ709C8 AC005559.1-201ENST00000589661 871 ntBASIC23.45■■□□□ 1.34
VPS13CQ709C8 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
VPS13CQ709C8 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.43■■□□□ 1.34
VPS13CQ709C8 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
VPS13CQ709C8 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
VPS13CQ709C8 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.43■■□□□ 1.34
VPS13CQ709C8 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
VPS13CQ709C8 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS13CQ709C8 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.41■■□□□ 1.34
VPS13CQ709C8 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.39■■□□□ 1.34
VPS13CQ709C8 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.39■■□□□ 1.34
VPS13CQ709C8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC23.39■■□□□ 1.33
VPS13CQ709C8 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
VPS13CQ709C8 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.39■■□□□ 1.33
VPS13CQ709C8 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.38■■□□□ 1.33
VPS13CQ709C8 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.38■■□□□ 1.33
VPS13CQ709C8 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
VPS13CQ709C8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
VPS13CQ709C8 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.35■■□□□ 1.33
VPS13CQ709C8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
VPS13CQ709C8 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
VPS13CQ709C8 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
VPS13CQ709C8 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS13CQ709C8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
VPS13CQ709C8 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.31■■□□□ 1.32
VPS13CQ709C8 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.31■■□□□ 1.32
VPS13CQ709C8 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.31■■□□□ 1.32
VPS13CQ709C8 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
VPS13CQ709C8 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VPS13CQ709C8 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.3■■□□□ 1.32
VPS13CQ709C8 MIR4449-201ENST00000578365 66 ntBASIC23.3■■□□□ 1.32
VPS13CQ709C8 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.29■■□□□ 1.32
VPS13CQ709C8 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
VPS13CQ709C8 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VPS13CQ709C8 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS13CQ709C8 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.27■■□□□ 1.32
VPS13CQ709C8 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.27■■□□□ 1.32
VPS13CQ709C8 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
VPS13CQ709C8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS13CQ709C8 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.24■■□□□ 1.31
VPS13CQ709C8 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.23■■□□□ 1.31
VPS13CQ709C8 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms