Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC40Q4G0X9 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC40Q4G0X9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
CCDC40Q4G0X9 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.47■■■□□ 2.47
CCDC40Q4G0X9 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.46■■■□□ 2.47
CCDC40Q4G0X9 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CCDC40Q4G0X9 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CCDC40Q4G0X9 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC40Q4G0X9 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.42■■■□□ 2.46
CCDC40Q4G0X9 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.41■■■□□ 2.46
CCDC40Q4G0X9 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC40Q4G0X9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
CCDC40Q4G0X9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
CCDC40Q4G0X9 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.4■■■□□ 2.46
CCDC40Q4G0X9 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC40Q4G0X9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC40Q4G0X9 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.38■■■□□ 2.45
CCDC40Q4G0X9 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
CCDC40Q4G0X9 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC40Q4G0X9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.37■■■□□ 2.45
CCDC40Q4G0X9 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC40Q4G0X9 AP002365.1-201ENST00000603448 772 ntBASIC30.36■■■□□ 2.45
CCDC40Q4G0X9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC40Q4G0X9 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.33■■■□□ 2.45
CCDC40Q4G0X9 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC40Q4G0X9 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC40Q4G0X9 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.31■■■□□ 2.44
CCDC40Q4G0X9 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.31■■■□□ 2.44
CCDC40Q4G0X9 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC40Q4G0X9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.3■■■□□ 2.44
CCDC40Q4G0X9 AL031258.1-201ENST00000623562 325 ntBASIC30.3■■■□□ 2.44
CCDC40Q4G0X9 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.3■■■□□ 2.44
CCDC40Q4G0X9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC40Q4G0X9 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC40Q4G0X9 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC40Q4G0X9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.27■■■□□ 2.44
CCDC40Q4G0X9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CCDC40Q4G0X9 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CCDC40Q4G0X9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CCDC40Q4G0X9 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.25■■■□□ 2.43
CCDC40Q4G0X9 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC40Q4G0X9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC40Q4G0X9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC40Q4G0X9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.23■■■□□ 2.43
CCDC40Q4G0X9 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.23■■■□□ 2.43
CCDC40Q4G0X9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.23■■■□□ 2.43
CCDC40Q4G0X9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CCDC40Q4G0X9 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
CCDC40Q4G0X9 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.2■■■□□ 2.43
CCDC40Q4G0X9 AC120057.4-201ENST00000624722 1615 ntBASIC30.2■■■□□ 2.43
CCDC40Q4G0X9 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC40Q4G0X9 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC40Q4G0X9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC40Q4G0X9 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC40Q4G0X9 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC40Q4G0X9 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.12■■■□□ 2.41
CCDC40Q4G0X9 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC40Q4G0X9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC40Q4G0X9 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC40Q4G0X9 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.1■■■□□ 2.41
CCDC40Q4G0X9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.1■■■□□ 2.41
CCDC40Q4G0X9 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CCDC40Q4G0X9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.08■■■□□ 2.41
CCDC40Q4G0X9 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC40Q4G0X9 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.05■■■□□ 2.4
CCDC40Q4G0X9 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC40Q4G0X9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.04■■■□□ 2.4
CCDC40Q4G0X9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC40Q4G0X9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.04■■■□□ 2.4
CCDC40Q4G0X9 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CCDC40Q4G0X9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
CCDC40Q4G0X9 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
CCDC40Q4G0X9 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
CCDC40Q4G0X9 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
CCDC40Q4G0X9 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30■■■□□ 2.39
CCDC40Q4G0X9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
CCDC40Q4G0X9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.94■■■□□ 2.38
CCDC40Q4G0X9 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CCDC40Q4G0X9 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CCDC40Q4G0X9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CCDC40Q4G0X9 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.91■■■□□ 2.38
CCDC40Q4G0X9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CCDC40Q4G0X9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.91■■■□□ 2.38
CCDC40Q4G0X9 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC29.9■■■□□ 2.38
CCDC40Q4G0X9 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC29.9■■■□□ 2.38
CCDC40Q4G0X9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
CCDC40Q4G0X9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
CCDC40Q4G0X9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.88■■■□□ 2.37
CCDC40Q4G0X9 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
CCDC40Q4G0X9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
CCDC40Q4G0X9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CCDC40Q4G0X9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CCDC40Q4G0X9 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.86■■■□□ 2.37
CCDC40Q4G0X9 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.86■■■□□ 2.37
CCDC40Q4G0X9 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.85■■■□□ 2.37
CCDC40Q4G0X9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CCDC40Q4G0X9 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
CCDC40Q4G0X9 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
CCDC40Q4G0X9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.82■■■□□ 2.36
CCDC40Q4G0X9 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms