Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
LRRC53A6NM62 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
LRRC53A6NM62 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
LRRC53A6NM62 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
LRRC53A6NM62 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.05■■■□□ 2.4
LRRC53A6NM62 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
LRRC53A6NM62 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
LRRC53A6NM62 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
LRRC53A6NM62 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.04■■■□□ 2.4
LRRC53A6NM62 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
LRRC53A6NM62 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
LRRC53A6NM62 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
LRRC53A6NM62 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.02■■■□□ 2.4
LRRC53A6NM62 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
LRRC53A6NM62 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
LRRC53A6NM62 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
LRRC53A6NM62 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
LRRC53A6NM62 ZNRF2P1-201ENST00000441407 443 ntBASIC30■■■□□ 2.39
LRRC53A6NM62 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
LRRC53A6NM62 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
LRRC53A6NM62 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
LRRC53A6NM62 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.97■■■□□ 2.39
LRRC53A6NM62 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
LRRC53A6NM62 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.96■■■□□ 2.39
LRRC53A6NM62 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
LRRC53A6NM62 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
LRRC53A6NM62 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
LRRC53A6NM62 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
LRRC53A6NM62 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.92■■■□□ 2.38
LRRC53A6NM62 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.92■■■□□ 2.38
LRRC53A6NM62 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.92■■■□□ 2.38
LRRC53A6NM62 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC29.91■■■□□ 2.38
LRRC53A6NM62 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
LRRC53A6NM62 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
LRRC53A6NM62 AC120057.4-201ENST00000624722 1615 ntBASIC29.86■■■□□ 2.37
LRRC53A6NM62 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.85■■■□□ 2.37
LRRC53A6NM62 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.85■■■□□ 2.37
LRRC53A6NM62 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.85■■■□□ 2.37
LRRC53A6NM62 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
LRRC53A6NM62 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
LRRC53A6NM62 MVK-208ENST00000539696 608 ntTSL 5 BASIC29.83■■■□□ 2.37
LRRC53A6NM62 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
LRRC53A6NM62 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.83■■■□□ 2.37
LRRC53A6NM62 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.81■■■□□ 2.36
LRRC53A6NM62 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
LRRC53A6NM62 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC29.79■■■□□ 2.36
LRRC53A6NM62 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
LRRC53A6NM62 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
LRRC53A6NM62 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
LRRC53A6NM62 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
LRRC53A6NM62 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC29.72■■■□□ 2.35
LRRC53A6NM62 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
LRRC53A6NM62 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC29.7■■■□□ 2.35
LRRC53A6NM62 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.69■■■□□ 2.34
LRRC53A6NM62 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
LRRC53A6NM62 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
LRRC53A6NM62 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.67■■■□□ 2.34
LRRC53A6NM62 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
LRRC53A6NM62 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
LRRC53A6NM62 DYNLL1-208ENST00000550178 581 ntBASIC29.66■■■□□ 2.34
LRRC53A6NM62 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC29.63■■■□□ 2.33
LRRC53A6NM62 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
LRRC53A6NM62 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
LRRC53A6NM62 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.62■■■□□ 2.33
LRRC53A6NM62 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
LRRC53A6NM62 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
LRRC53A6NM62 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.61■■■□□ 2.33
LRRC53A6NM62 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
LRRC53A6NM62 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
LRRC53A6NM62 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
LRRC53A6NM62 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
LRRC53A6NM62 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
LRRC53A6NM62 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
LRRC53A6NM62 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
LRRC53A6NM62 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.54■■■□□ 2.32
LRRC53A6NM62 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
LRRC53A6NM62 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
LRRC53A6NM62 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC29.52■■■□□ 2.32
LRRC53A6NM62 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
LRRC53A6NM62 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
LRRC53A6NM62 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
LRRC53A6NM62 ABCB10P1-201ENST00000614297 2181 ntBASIC29.48■■■□□ 2.31
LRRC53A6NM62 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
LRRC53A6NM62 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
LRRC53A6NM62 AL031258.1-201ENST00000623562 325 ntBASIC29.47■■■□□ 2.31
LRRC53A6NM62 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
LRRC53A6NM62 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
LRRC53A6NM62 EBPL-203ENST00000378270 579 ntTSL 2 BASIC29.46■■■□□ 2.31
LRRC53A6NM62 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
LRRC53A6NM62 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
LRRC53A6NM62 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC29.45■■■□□ 2.31
LRRC53A6NM62 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
LRRC53A6NM62 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.42■■■□□ 2.3
LRRC53A6NM62 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
LRRC53A6NM62 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
LRRC53A6NM62 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
LRRC53A6NM62 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.41■■■□□ 2.3
LRRC53A6NM62 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
LRRC53A6NM62 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.4■■■□□ 2.3
LRRC53A6NM62 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms