Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.88■■□□□ 1.09
TRAV41A0A0B4J266 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAV41A0A0B4J266 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV41A0A0B4J266 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV41A0A0B4J266 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAV41A0A0B4J266 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.84■■□□□ 1.09
TRAV41A0A0B4J266 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
TRAV41A0A0B4J266 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.83■■□□□ 1.09
TRAV41A0A0B4J266 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV41A0A0B4J266 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC21.82■■□□□ 1.08
TRAV41A0A0B4J266 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV41A0A0B4J266 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.8■■□□□ 1.08
TRAV41A0A0B4J266 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV41A0A0B4J266 RARRES2P7-201ENST00000567349 469 ntBASIC21.79■■□□□ 1.08
TRAV41A0A0B4J266 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC21.79■■□□□ 1.08
TRAV41A0A0B4J266 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV41A0A0B4J266 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC21.78■■□□□ 1.08
TRAV41A0A0B4J266 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV41A0A0B4J266 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
TRAV41A0A0B4J266 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
TRAV41A0A0B4J266 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC21.76■■□□□ 1.07
TRAV41A0A0B4J266 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV41A0A0B4J266 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV41A0A0B4J266 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.75■■□□□ 1.07
TRAV41A0A0B4J266 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.75■■□□□ 1.07
TRAV41A0A0B4J266 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRAV41A0A0B4J266 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.73■■□□□ 1.07
TRAV41A0A0B4J266 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.73■■□□□ 1.07
TRAV41A0A0B4J266 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV41A0A0B4J266 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV41A0A0B4J266 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV41A0A0B4J266 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV41A0A0B4J266 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV41A0A0B4J266 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.69■■□□□ 1.06
TRAV41A0A0B4J266 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV41A0A0B4J266 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV41A0A0B4J266 SETD8P1-201ENST00000623146 1180 ntBASIC21.66■■□□□ 1.06
TRAV41A0A0B4J266 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV41A0A0B4J266 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV41A0A0B4J266 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV41A0A0B4J266 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV41A0A0B4J266 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV41A0A0B4J266 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV41A0A0B4J266 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAV41A0A0B4J266 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV41A0A0B4J266 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV41A0A0B4J266 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV41A0A0B4J266 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
TRAV41A0A0B4J266 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV41A0A0B4J266 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRAV41A0A0B4J266 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV41A0A0B4J266 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.57■■□□□ 1.04
TRAV41A0A0B4J266 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV41A0A0B4J266 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.56■■□□□ 1.04
TRAV41A0A0B4J266 AL133380.1-201ENST00000506013 324 ntBASIC21.56■■□□□ 1.04
TRAV41A0A0B4J266 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.55■■□□□ 1.04
TRAV41A0A0B4J266 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAV41A0A0B4J266 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV41A0A0B4J266 AC097358.2-201ENST00000607541 1159 ntBASIC21.52■■□□□ 1.04
TRAV41A0A0B4J266 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV41A0A0B4J266 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.52■■□□□ 1.03
TRAV41A0A0B4J266 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV41A0A0B4J266 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
TRAV41A0A0B4J266 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV41A0A0B4J266 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV41A0A0B4J266 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV41A0A0B4J266 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV41A0A0B4J266 AC120057.4-201ENST00000624722 1615 ntBASIC21.49■■□□□ 1.03
TRAV41A0A0B4J266 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
TRAV41A0A0B4J266 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV41A0A0B4J266 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV41A0A0B4J266 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV41A0A0B4J266 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.47■■□□□ 1.03
TRAV41A0A0B4J266 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
TRAV41A0A0B4J266 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.47■■□□□ 1.03
TRAV41A0A0B4J266 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
TRAV41A0A0B4J266 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC21.46■■□□□ 1.03
TRAV41A0A0B4J266 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRAV41A0A0B4J266 AC136428.2-201ENST00000563187 214 ntBASIC21.46■■□□□ 1.03
TRAV41A0A0B4J266 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.46■■□□□ 1.03
TRAV41A0A0B4J266 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.46■■□□□ 1.03
TRAV41A0A0B4J266 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV41A0A0B4J266 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.44■■□□□ 1.02
TRAV41A0A0B4J266 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC21.44■■□□□ 1.02
TRAV41A0A0B4J266 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV41A0A0B4J266 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
TRAV41A0A0B4J266 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV41A0A0B4J266 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
TRAV41A0A0B4J266 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
TRAV41A0A0B4J266 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV41A0A0B4J266 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV41A0A0B4J266 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
TRAV41A0A0B4J266 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV41A0A0B4J266 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.4■■□□□ 1.02
TRAV41A0A0B4J266 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV41A0A0B4J266 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV41A0A0B4J266 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.39■■□□□ 1.01
TRAV41A0A0B4J266 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV41A0A0B4J266 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV41A0A0B4J266 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms