Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 COX4I1-213ENST00000567241 561 ntTSL 420.55■□□□□ 0.883e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-215ENST00000568339 2271 ntTSL 217.11■□□□□ 0.333e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-210ENST00000566115 471 ntTSL 316.78■□□□□ 0.283e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.243e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-206ENST00000564544 617 ntTSL 315.76■□□□□ 0.113e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC15.4■□□□□ 0.063e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-218ENST00000570123 551 ntTSL 515.23■□□□□ 0.033e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-204ENST00000562929 452 ntTSL 513.15□□□□□ -0.33e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-211ENST00000566405 490 ntTSL 512.83□□□□□ -0.363e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-217ENST00000569997 3946 nt9.34□□□□□ -0.913e-10■□□□□ 9.8
LIN28BQ6ZN17 COX4I1-207ENST00000564648 1235 ntTSL 59.29□□□□□ -0.923e-10■□□□□ 9.8
LIN28BQ6ZN17 EEF1B2-207ENST00000445505 515 ntTSL 519.56■□□□□ 0.726e-10■□□□□ 9.8
LIN28BQ6ZN17 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.457e-9■□□□□ 9.8
LIN28BQ6ZN17 VRK1-206ENST00000557222 1029 ntTSL 510□□□□□ -0.817e-9■□□□□ 9.8
LIN28BQ6ZN17 IDH1-206ENST00000451391 563 ntTSL 321.38■■□□□ 1.019e-8■□□□□ 9.8
LIN28BQ6ZN17 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.879e-8■□□□□ 9.8
LIN28BQ6ZN17 IDH1-202ENST00000415282 942 ntTSL 220.05■□□□□ 0.89e-8■□□□□ 9.8
LIN28BQ6ZN17 IDH1-204ENST00000417583 702 ntTSL 415.67■□□□□ 0.19e-8■□□□□ 9.8
LIN28BQ6ZN17 IDH1-208ENST00000481557 556 ntTSL 213.93□□□□□ -0.189e-8■□□□□ 9.8
LIN28BQ6ZN17 IDH1-207ENST00000462386 1614 ntTSL 213.8□□□□□ -0.29e-8■□□□□ 9.8
LIN28BQ6ZN17 IDH1-203ENST00000415913 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.429e-8■□□□□ 9.8
LIN28BQ6ZN17 IDH1-201ENST00000345146 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.629e-8■□□□□ 9.8
LIN28BQ6ZN17 GNL2-209ENST00000538069 698 ntTSL 310.49□□□□□ -0.739e-8■□□□□ 9.8
LIN28BQ6ZN17 GNL2-204ENST00000469191 533 ntTSL 37.91□□□□□ -1.149e-8■□□□□ 9.8
LIN28BQ6ZN17 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.262e-6■□□□□ 9.8
LIN28BQ6ZN17 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.242e-6■□□□□ 9.8
LIN28BQ6ZN17 RARRES2-204ENST00000478771 1907 ntTSL 221.27■■□□□ 12e-6■□□□□ 9.8
LIN28BQ6ZN17 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20■□□□□ 0.792e-6■□□□□ 9.8
LIN28BQ6ZN17 RARRES2-203ENST00000467793 583 ntTSL 318.41■□□□□ 0.542e-6■□□□□ 9.8
LIN28BQ6ZN17 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.91■□□□□ 0.32e-6■□□□□ 9.8
LIN28BQ6ZN17 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.272e-6■□□□□ 9.8
LIN28BQ6ZN17 ARSB-203ENST00000521011 612 ntTSL 315.52■□□□□ 0.082e-6■□□□□ 9.8
LIN28BQ6ZN17 AL449266.1-201ENST00000357393 557 ntAPPRIS P1 TSL 4 BASIC13.22□□□□□ -0.298e-7■□□□□ 9.8
LIN28BQ6ZN17 CLCC1-207ENST00000369976 2468 ntTSL 2 BASIC12.74□□□□□ -0.378e-7■□□□□ 9.8
LIN28BQ6ZN17 GREB1-202ENST00000263834 2448 ntTSL 1 (best) BASIC10.86□□□□□ -0.672e-6■□□□□ 9.8
LIN28BQ6ZN17 ARSI-202ENST00000509146 472 ntTSL 410.38□□□□□ -0.752e-6■□□□□ 9.8
LIN28BQ6ZN17 GREB1-203ENST00000381483 2347 ntTSL 1 (best) BASIC9.4□□□□□ -0.92e-6■□□□□ 9.8
LIN28BQ6ZN17 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.268e-7■□□□□ 9.8
LIN28BQ6ZN17 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.18□□□□□ -1.428e-7■□□□□ 9.8
LIN28BQ6ZN17 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.9□□□□□ -1.468e-7■□□□□ 9.8
LIN28BQ6ZN17 ARHGAP18-203ENST00000483367 460 ntTSL 35.85□□□□□ -1.472e-6■□□□□ 9.8
LIN28BQ6ZN17 ARHGAP18-202ENST00000463225 464 ntTSL 33.96□□□□□ -1.782e-6■□□□□ 9.8
LIN28BQ6ZN17 CLCC1-209ENST00000482889 752 ntTSL 33.3□□□□□ -1.888e-7■□□□□ 9.8
LIN28BQ6ZN17 CLCC1-208ENST00000473062 319 ntTSL 33.27□□□□□ -1.898e-7■□□□□ 9.8
LIN28BQ6ZN17 SOX13-205ENST00000525258 744 ntTSL 317.09■□□□□ 0.333e-7■□□□□ 9.8
LIN28BQ6ZN17 SOX13-201ENST00000272193 1754 ntTSL 216.36■□□□□ 0.213e-7■□□□□ 9.8
LIN28BQ6ZN17 MAT1A-202ENST00000455001 435 ntTSL 512.03□□□□□ -0.483e-7■□□□□ 9.8
LIN28BQ6ZN17 SOX13-203ENST00000367204 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.493e-7■□□□□ 9.8
LIN28BQ6ZN17 SOX13-210ENST00000618875 3476 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.813e-7■□□□□ 9.8
LIN28BQ6ZN17 CTNNA1-223ENST00000520520 484 ntTSL 39.1□□□□□ -0.953e-7■□□□□ 9.8
LIN28BQ6ZN17 MAT1A-201ENST00000372213 3410 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.063e-7■□□□□ 9.8
LIN28BQ6ZN17 CNOT1-219ENST00000569882 831 ntTSL 35.37□□□□□ -1.553e-7■□□□□ 9.8
LIN28BQ6ZN17 MERTK-206ENST00000473065 545 ntTSL 34.15□□□□□ -1.753e-7■□□□□ 9.8
LIN28BQ6ZN17 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.081e-8■□□□□ 9.8
LIN28BQ6ZN17 RPL38-206ENST00000533498 532 ntAPPRIS P2 TSL 2 BASIC13.45□□□□□ -0.261e-8■□□□□ 9.8
LIN28BQ6ZN17 RPL38-201ENST00000311111 1170 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.571e-8■□□□□ 9.8
LIN28BQ6ZN17 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.67□□□□□ -1.821e-8■□□□□ 9.8
LIN28BQ6ZN17 FBXW2-203ENST00000476481 661 ntTSL 322.37■■□□□ 1.173e-6■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-222ENST00000575009 1146 ntTSL 529.47■■■□□ 2.313e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-226ENST00000576415 461 ntTSL 228.81■■■□□ 2.23e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-223ENST00000575701 860 ntTSL 328.33■■■□□ 2.133e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.74■■□□□ 1.711e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-229ENST00000576894 2210 ntTSL 1 (best)20.31■□□□□ 0.843e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-219ENST00000574340 579 ntTSL 319.7■□□□□ 0.743e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-217ENST00000573692 459 ntTSL 318.95■□□□□ 0.624e-14■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-218ENST00000574331 1759 ntTSL 218.49■□□□□ 0.554e-14■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-230ENST00000576924 3314 ntTSL 1 (best)16.48■□□□□ 0.233e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.72■□□□□ 0.113e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.061e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-208ENST00000571378 2870 ntTSL 1 (best)14.47□□□□□ -0.093e-9■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-202ENST00000570539 431 ntTSL 211.74□□□□□ -0.534e-14■□□□□ 9.7
LIN28BQ6ZN17 SRRM2-216ENST00000573583 543 ntTSL 49.92□□□□□ -0.824e-14■□□□□ 9.7
LIN28BQ6ZN17 XRCC5-209ENST00000485763 616 ntTSL 27.71□□□□□ -1.183e-9■□□□□ 9.7
LIN28BQ6ZN17 CSDE1-216ENST00000534389 601 ntTSL 42.57□□□□□ -23e-9■□□□□ 9.7
LIN28BQ6ZN17 TPM3-220ENST00000509601 543 ntTSL 420.45■□□□□ 0.864e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC15.29■□□□□ 0.044e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-216ENST00000473036 746 ntTSL 214.65□□□□□ -0.064e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC14.21□□□□□ -0.134e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-202ENST00000302206 741 ntTSL 3 BASIC12.39□□□□□ -0.434e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-210ENST00000368530 1523 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.64e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-201ENST00000271850 1219 ntAPPRIS ALT1 TSL 5 BASIC10.41□□□□□ -0.744e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-209ENST00000368527 569 ntTSL 410.03□□□□□ -0.84e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-218ENST00000505010 540 ntTSL 29.94□□□□□ -0.824e-6■□□□□ 9.7
LIN28BQ6ZN17 TPM3-203ENST00000312970 750 ntTSL 59.35□□□□□ -0.914e-6■□□□□ 9.7
LIN28BQ6ZN17 DDIT4-203ENST00000473155 753 ntTSL 1 (best)23.74■■□□□ 1.392e-9■□□□□ 9.7
LIN28BQ6ZN17 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.644e-9■□□□□ 9.7
LIN28BQ6ZN17 GARS-207ENST00000484093 644 ntTSL 49.14□□□□□ -0.955e-11■□□□□ 9.7
LIN28BQ6ZN17 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.761e-6■□□□□ 9.7
LIN28BQ6ZN17 FN1-220ENST00000480024 576 ntTSL 27.68□□□□□ -1.184e-48■□□□□ 9.7
LIN28BQ6ZN17 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.057e-7■□□□□ 9.7
LIN28BQ6ZN17 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -07e-7■□□□□ 9.7
LIN28BQ6ZN17 VARS-224ENST00000479051 612 ntTSL 322.77■■□□□ 1.243e-7■□□□□ 9.7
LIN28BQ6ZN17 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.563e-7■□□□□ 9.7
LIN28BQ6ZN17 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.03■□□□□ 0.483e-7■□□□□ 9.7
LIN28BQ6ZN17 HM13-222ENST00000494153 757 ntTSL 516.47■□□□□ 0.231e-7■□□□□ 9.7
LIN28BQ6ZN17 HM13-206ENST00000460389 1075 ntTSL 516.43■□□□□ 0.227e-8■□□□□ 9.7
LIN28BQ6ZN17 HNRNPH3-206ENST00000478698 1507 ntTSL 215.74■□□□□ 0.113e-7■□□□□ 9.7
LIN28BQ6ZN17 HNRNPH3-210ENST00000490442 1521 ntTSL 215.74■□□□□ 0.113e-7■□□□□ 9.7
LIN28BQ6ZN17 VARS-225ENST00000482996 728 ntTSL 315.66■□□□□ 0.13e-7■□□□□ 9.7
LIN28BQ6ZN17 HNRNPH3-207ENST00000480987 752 ntTSL 414.69□□□□□ -0.063e-7■□□□□ 9.7
Retrieved 100 of 21,972 protein–RNA pairs in 277.3 ms