RNA–Protein interactions for RNA: ENST00000479051.1

VARS-224, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 612 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-224ENST00000479051 NISCHQ9Y2I1 1504 aa49.39■■■■■ 5.5
VARS-224ENST00000479051 CCDC180Q9P1Z9 1646 aa43.9■■■■■ 4.62
VARS-224ENST00000479051 ABCC9O60706 1549 aa42.82■■■■■ 4.45
VARS-224ENST00000479051 RB1CC1Q8TDY2 1594 aa41.29■■■■■ 4.2
VARS-224ENST00000479051 DCAF8L2P0C7V8 631 aa41.29■■■■■ 4.2
VARS-224ENST00000479051 NACADO15069 1562 aa41.26■■■■■ 4.2
VARS-224ENST00000479051 ZCCHC6Q5VYS8 1495 aaKnown RBP41.17■■■■■ 4.18
VARS-224ENST00000479051 MYO15BQ96JP2 1530 aa41.04■■■■■ 4.16
VARS-224ENST00000479051 DCAF1Q9Y4B6 1507 aa40.9■■■■■ 4.14
VARS-224ENST00000479051 UNC13AQ9UPW8 1703 aa40.25■■■■■ 4.03
VARS-224ENST00000479051 SCRIBQ14160 1630 aa40.05■■■■■ 4
VARS-224ENST00000479051 PABPN1Q86U42 306 aaKnown RBP eCLIP40.03■■■■■ 4
VARS-224ENST00000479051 BICRAQ9NZM4 1560 aa39.93■■■■□ 3.98
VARS-224ENST00000479051 SHROOM4Q9ULL8 1493 aa39.65■■■■□ 3.94
VARS-224ENST00000479051 DNAJC5BQ9UF47 199 aa39.11■■■■□ 3.85
VARS-224ENST00000479051 EIF4G1Q04637 1599 aaKnown RBP38.93■■■■□ 3.82
VARS-224ENST00000479051 CC2D2AQ9P2K1 1620 aa38.74■■■■□ 3.79
VARS-224ENST00000479051 CECR2Q9BXF3 1484 aa38.48■■■■□ 3.75
VARS-224ENST00000479051 BAZ1AQ9NRL2 1556 aaPredicted RBP38.32■■■■□ 3.73
VARS-224ENST00000479051 SMARCA4P51532 1647 aa38.31■■■■□ 3.72
VARS-224ENST00000479051 SMARCA2P51531 1590 aa38.09■■■■□ 3.69
VARS-224ENST00000479051 ATAD2BQ9ULI0 1458 aa38.08■■■■□ 3.69
VARS-224ENST00000479051 NCAPD3P42695 1498 aa38.04■■■■□ 3.68
VARS-224ENST00000479051 MROH2BQ7Z745 1585 aa38.04■■■■□ 3.68
VARS-224ENST00000479051 PEG3Q9GZU2 1588 aa37.93■■■■□ 3.66
VARS-224ENST00000479051 HMGXB3Q12766 1538 aa37.88■■■■□ 3.65
VARS-224ENST00000479051 BAZ1BQ9UIG0 1483 aaKnown RBP37.81■■■■□ 3.64
VARS-224ENST00000479051 RSF1Q96T23 1441 aaPredicted RBP37.67■■■■□ 3.62
VARS-224ENST00000479051 WIZO95785 1651 aa37.64■■■■□ 3.62
VARS-224ENST00000479051 TOP2AP11388 1531 aaKnown RBP37.29■■■■□ 3.56
VARS-224ENST00000479051 LAMC3Q9Y6N6 1575 aa37.05■■■■□ 3.52
VARS-224ENST00000479051 NESP48681 1621 aa37.05■■■■□ 3.52
VARS-224ENST00000479051 ERCC6Q03468 1493 aa36.97■■■■□ 3.51
VARS-224ENST00000479051 CADPSQ9ULU8 1353 aa36.96■■■■□ 3.51
VARS-224ENST00000479051 PDS5BQ9NTI5 1447 aa36.84■■■■□ 3.49
VARS-224ENST00000479051 SUPT5HO00267 1087 aaKnown RBP36.83■■■■□ 3.49
VARS-224ENST00000479051 CCDC88BA6NC98 1476 aa36.82■■■■□ 3.49
VARS-224ENST00000479051 CFTRP13569 1480 aa36.75■■■■□ 3.47
VARS-224ENST00000479051 KIF21AQ7Z4S6 1674 aa36.64■■■■□ 3.46
VARS-224ENST00000479051 FANCD2Q9BXW9 1451 aa36.53■■■■□ 3.44
VARS-224ENST00000479051 CUX2O14529 1486 aa36.52■■■■□ 3.44
VARS-224ENST00000479051 CEP164Q9UPV0 1460 aa36.5■■■■□ 3.43
VARS-224ENST00000479051 THOC2Q8NI27 1593 aaKnown RBP36.49■■■■□ 3.43
VARS-224ENST00000479051 PRDM2Q13029 1718 aa36.48■■■■□ 3.43
VARS-224ENST00000479051 MRC2Q9UBG0 1479 aa36.42■■■■□ 3.42
VARS-224ENST00000479051 WDR62O43379 1518 aa36.27■■■■□ 3.4
VARS-224ENST00000479051 URB2Q14146 1524 aaKnown RBP36.12■■■■□ 3.37
VARS-224ENST00000479051 ABCC8Q09428 1581 aa36.02■■■■□ 3.36
VARS-224ENST00000479051 TOPBP1Q92547 1522 aa35.94■■■■□ 3.34
VARS-224ENST00000479051 DNMBPQ6XZF7 1577 aa35.93■■■■□ 3.34
VARS-224ENST00000479051 IFT140Q96RY7 1462 aa35.73■■■■□ 3.31
VARS-224ENST00000479051 CUX1P39880 1505 aa35.7■■■■□ 3.31
VARS-224ENST00000479051 POLA1P09884 1462 aaPredicted RBP35.64■■■■□ 3.3
VARS-224ENST00000479051 FGD5Q6ZNL6 1462 aa35.59■■■■□ 3.29
VARS-224ENST00000479051 WRNQ14191 1432 aaPredicted RBP eCLIP35.56■■■■□ 3.28
VARS-224ENST00000479051 SOGA1O94964 1423 aa35.53■■■■□ 3.28
VARS-224ENST00000479051 TARBP1Q13395 1621 aaKnown RBP35.52■■■■□ 3.28
VARS-224ENST00000479051 ZNF608Q9ULD9 1512 aaPredicted RBP35.49■■■■□ 3.27
VARS-224ENST00000479051 RAD54L2Q9Y4B4 1467 aa35.47■■■■□ 3.27
VARS-224ENST00000479051 TOP2BQ02880 1626 aa35.44■■■■□ 3.26
VARS-224ENST00000479051 BIVM-ERCC5R4GMW8 1640 aa35.43■■■■□ 3.26
VARS-224ENST00000479051 SYNJ1O43426 1573 aa35.41■■■■□ 3.26
VARS-224ENST00000479051 EIF4G3O43432 1585 aaKnown RBP35.38■■■■□ 3.25
VARS-224ENST00000479051 WDR97A6NE52 1622 aa35.33■■■■□ 3.25
VARS-224ENST00000479051 AQRO60306 1485 aaKnown RBP eCLIP35.32■■■■□ 3.243e-8■■■■■ 30.9
VARS-224ENST00000479051 TDRD9Q8NDG6 1382 aaKnown RBP35.28■■■■□ 3.24
VARS-224ENST00000479051 ABCA10Q8WWZ4 1543 aa35.25■■■■□ 3.23
VARS-224ENST00000479051 DNAJC5Q9H3Z4 198 aa35.23■■■■□ 3.23
VARS-224ENST00000479051 GAPVD1Q14C86 1478 aa35.13■■■■□ 3.21
VARS-224ENST00000479051 GRIN2BQ13224 1484 aa35.11■■■■□ 3.21
VARS-224ENST00000479051 ABCA5Q8WWZ7 1642 aa35.07■■■■□ 3.21
VARS-224ENST00000479051 OSCARQ8IYS5 282 aa35.05■■■■□ 3.2
VARS-224ENST00000479051 SNAPC4Q5SXM2 1469 aa35.03■■■■□ 3.2
VARS-224ENST00000479051 PBRM1Q86U86 1689 aa35.02■■■■□ 3.2
VARS-224ENST00000479051 MAGI1Q96QZ7 1491 aaPredicted RBP35.02■■■■□ 3.2
VARS-224ENST00000479051 FBLN2P98095 1184 aa34.95■■■■□ 3.19
VARS-224ENST00000479051 CHD1O14646 1710 aa34.91■■■■□ 3.18
VARS-224ENST00000479051 CHMP7Q8WUX9 453 aaPredicted RBP34.88■■■■□ 3.17
VARS-224ENST00000479051 SYNJ2O15056 1496 aa34.86■■■■□ 3.17
VARS-224ENST00000479051 ERICH3Q5RHP9 1530 aa34.86■■■■□ 3.17
VARS-224ENST00000479051 KIF27Q86VH2 1401 aa34.84■■■■□ 3.17
VARS-224ENST00000479051 TRIM41Q8WV44 630 aa34.83■■■■□ 3.17
VARS-224ENST00000479051 ADAMTS12P58397 1594 aa34.76■■■■□ 3.16
VARS-224ENST00000479051 FHAD1B1AJZ9 1412 aa34.73■■■■□ 3.15
VARS-224ENST00000479051 GRIN2AQ12879 1464 aa34.65■■■■□ 3.14
VARS-224ENST00000479051 IGF1RP08069 1367 aa34.62■■■■□ 3.13
VARS-224ENST00000479051 CUL7Q14999 1698 aa34.57■■■■□ 3.13
VARS-224ENST00000479051 CLASP1Q7Z460 1538 aa34.53■■■■□ 3.12
VARS-224ENST00000479051 NUP160Q12769 1436 aa34.47■■■■□ 3.11
VARS-224ENST00000479051 CARMIL1Q5VZK9 1371 aa34.46■■■■□ 3.11
VARS-224ENST00000479051 ARHGEF11O15085 1522 aa34.43■■■■□ 3.1
VARS-224ENST00000479051 RUSC2Q8N2Y8 1516 aa34.43■■■■□ 3.1
VARS-224ENST00000479051 CEP170Q5SW79 1584 aa34.42■■■■□ 3.1
VARS-224ENST00000479051 RIMBP3CA6NJZ7 1639 aa34.41■■■■□ 3.1
VARS-224ENST00000479051 RIMBP3BA6NNM3 1639 aa34.41■■■■□ 3.1
VARS-224ENST00000479051 RIMBP3Q9UFD9 1639 aa34.41■■■■□ 3.1
VARS-224ENST00000479051 CHIC1Q5VXU3 224 aa34.4■■■■□ 3.1
VARS-224ENST00000479051 RAPGEF2Q9Y4G8 1499 aa34.27■■■■□ 3.08
VARS-224ENST00000479051 EEA1Q15075 1411 aa34.27■■■■□ 3.08
VARS-224ENST00000479051 KIAA0586Q9BVV6 1533 aa34.2■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms