RNA–Protein interactions for RNA: ENST00000505010.5

TPM3-218, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-218ENST00000505010 NISCHQ9Y2I1 1504 aa21.6■■□□□ 1.05
TPM3-218ENST00000505010 ABCC9O60706 1549 aa19.84■□□□□ 0.77
TPM3-218ENST00000505010 CCDC180Q9P1Z9 1646 aa19.3■□□□□ 0.68
TPM3-218ENST00000505010 DNAJC5BQ9UF47 199 aa19.06■□□□□ 0.64
TPM3-218ENST00000505010 RB1CC1Q8TDY2 1594 aa18.65■□□□□ 0.58
TPM3-218ENST00000505010 PABPN1Q86U42 306 aaKnown RBP eCLIP18.46■□□□□ 0.55
TPM3-218ENST00000505010 NACADO15069 1562 aa18.42■□□□□ 0.54
TPM3-218ENST00000505010 DCAF8L2P0C7V8 631 aa18.37■□□□□ 0.53
TPM3-218ENST00000505010 UNC13AQ9UPW8 1703 aa18.15■□□□□ 0.5
TPM3-218ENST00000505010 ZCCHC6Q5VYS8 1495 aaKnown RBP18.13■□□□□ 0.49
TPM3-218ENST00000505010 BICRAQ9NZM4 1560 aa18.09■□□□□ 0.49
TPM3-218ENST00000505010 MYO15BQ96JP2 1530 aa18■□□□□ 0.47
TPM3-218ENST00000505010 CECR2Q9BXF3 1484 aa17.93■□□□□ 0.46
TPM3-218ENST00000505010 DNAJC5Q9H3Z4 198 aa17.87■□□□□ 0.45
TPM3-218ENST00000505010 CC2D2AQ9P2K1 1620 aa17.87■□□□□ 0.45
TPM3-218ENST00000505010 DCAF1Q9Y4B6 1507 aa17.86■□□□□ 0.45
TPM3-218ENST00000505010 SHROOM4Q9ULL8 1493 aa17.82■□□□□ 0.44
TPM3-218ENST00000505010 EIF4G1Q04637 1599 aaKnown RBP17.71■□□□□ 0.43
TPM3-218ENST00000505010 SCRIBQ14160 1630 aa17.59■□□□□ 0.41
TPM3-218ENST00000505010 CUX2O14529 1486 aa17.28■□□□□ 0.36
TPM3-218ENST00000505010 ERCC6Q03468 1493 aa17.18■□□□□ 0.34
TPM3-218ENST00000505010 NCAPD3P42695 1498 aa17.04■□□□□ 0.32
TPM3-218ENST00000505010 TRIM41Q8WV44 630 aa16.91■□□□□ 0.3
TPM3-218ENST00000505010 ATAD2BQ9ULI0 1458 aa16.9■□□□□ 0.3
TPM3-218ENST00000505010 NESP48681 1621 aa16.89■□□□□ 0.29
TPM3-218ENST00000505010 SMARCA2P51531 1590 aa16.82■□□□□ 0.28
TPM3-218ENST00000505010 HMGXB3Q12766 1538 aa16.81■□□□□ 0.28
TPM3-218ENST00000505010 THOC2Q8NI27 1593 aaKnown RBP16.76■□□□□ 0.27
TPM3-218ENST00000505010 BAZ1AQ9NRL2 1556 aaPredicted RBP16.72■□□□□ 0.27
TPM3-218ENST00000505010 SMARCA4P51532 1647 aa16.72■□□□□ 0.27
TPM3-218ENST00000505010 BAZ1BQ9UIG0 1483 aaKnown RBP16.72■□□□□ 0.27
TPM3-218ENST00000505010 LAMC3Q9Y6N6 1575 aa16.69■□□□□ 0.26
TPM3-218ENST00000505010 SUPT5HO00267 1087 aaKnown RBP16.68■□□□□ 0.26
TPM3-218ENST00000505010 MROH2BQ7Z745 1585 aa16.68■□□□□ 0.26
TPM3-218ENST00000505010 PDS5BQ9NTI5 1447 aa16.67■□□□□ 0.26
TPM3-218ENST00000505010 RSF1Q96T23 1441 aaPredicted RBP16.64■□□□□ 0.25
TPM3-218ENST00000505010 KIF21AQ7Z4S6 1674 aa16.61■□□□□ 0.25
TPM3-218ENST00000505010 WIZO95785 1651 aa16.59■□□□□ 0.25
TPM3-218ENST00000505010 PEG3Q9GZU2 1588 aa16.56■□□□□ 0.24
TPM3-218ENST00000505010 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
TPM3-218ENST00000505010 MRC2Q9UBG0 1479 aa16.51■□□□□ 0.23
TPM3-218ENST00000505010 OSCARQ8IYS5 282 aa16.51■□□□□ 0.23
TPM3-218ENST00000505010 WDR62O43379 1518 aa16.45■□□□□ 0.22
TPM3-218ENST00000505010 TOP2AP11388 1531 aaKnown RBP16.4■□□□□ 0.22
TPM3-218ENST00000505010 CEP164Q9UPV0 1460 aa16.35■□□□□ 0.21
TPM3-218ENST00000505010 FANCD2Q9BXW9 1451 aa16.3■□□□□ 0.2
TPM3-218ENST00000505010 RIMBP3CA6NJZ7 1639 aa16.22■□□□□ 0.19
TPM3-218ENST00000505010 RIMBP3BA6NNM3 1639 aa16.22■□□□□ 0.19
TPM3-218ENST00000505010 RIMBP3Q9UFD9 1639 aa16.22■□□□□ 0.19
TPM3-218ENST00000505010 CFTRP13569 1480 aa16.2■□□□□ 0.18
TPM3-218ENST00000505010 CCDC88BA6NC98 1476 aa16.17■□□□□ 0.18
TPM3-218ENST00000505010 URB2Q14146 1524 aaKnown RBP16.17■□□□□ 0.18
TPM3-218ENST00000505010 CYB5RLQ6IPT4 315 aa16.16■□□□□ 0.18
TPM3-218ENST00000505010 TRHP20396 242 aaPredicted RBP16.15■□□□□ 0.18
TPM3-218ENST00000505010 ARHGEF11O15085 1522 aa16.14■□□□□ 0.18
TPM3-218ENST00000505010 ZNF608Q9ULD9 1512 aaPredicted RBP16.06■□□□□ 0.16
TPM3-218ENST00000505010 IFT140Q96RY7 1462 aa16.06■□□□□ 0.16
TPM3-218ENST00000505010 AEBP2Q6ZN18 517 aaPredicted RBP16.03■□□□□ 0.16
TPM3-218ENST00000505010 PRDM2Q13029 1718 aa15.97■□□□□ 0.15
TPM3-218ENST00000505010 FBLN2P98095 1184 aa15.96■□□□□ 0.15
TPM3-218ENST00000505010 ARAP1Q96P48 1450 aa15.95■□□□□ 0.14
TPM3-218ENST00000505010 TOPBP1Q92547 1522 aa15.92■□□□□ 0.14
TPM3-218ENST00000505010 EIF4G3O43432 1585 aaKnown RBP15.91■□□□□ 0.14
TPM3-218ENST00000505010 ABCC8Q09428 1581 aa15.9■□□□□ 0.14
TPM3-218ENST00000505010 AQRO60306 1485 aaKnown RBP eCLIP15.89■□□□□ 0.136e-8■□□□□ 11.1
TPM3-218ENST00000505010 CHD1O14646 1710 aa15.86■□□□□ 0.13
TPM3-218ENST00000505010 CHIC1Q5VXU3 224 aa15.84■□□□□ 0.13
TPM3-218ENST00000505010 DNMBPQ6XZF7 1577 aa15.81■□□□□ 0.12
TPM3-218ENST00000505010 TARBP1Q13395 1621 aaKnown RBP15.79■□□□□ 0.12
TPM3-218ENST00000505010 CHMP7Q8WUX9 453 aaPredicted RBP15.75■□□□□ 0.11
TPM3-218ENST00000505010 TDRD9Q8NDG6 1382 aaKnown RBP15.74■□□□□ 0.11
TPM3-218ENST00000505010 POLA1P09884 1462 aaPredicted RBP15.73■□□□□ 0.11
TPM3-218ENST00000505010 RAD54L2Q9Y4B4 1467 aa15.71■□□□□ 0.1
TPM3-218ENST00000505010 SYNJ1O43426 1573 aa15.7■□□□□ 0.1
TPM3-218ENST00000505010 SOGA1O94964 1423 aa15.7■□□□□ 0.1
TPM3-218ENST00000505010 WRNQ14191 1432 aaPredicted RBP eCLIP15.7■□□□□ 0.1
TPM3-218ENST00000505010 CLASP1Q7Z460 1538 aa15.68■□□□□ 0.1
TPM3-218ENST00000505010 SNAPC4Q5SXM2 1469 aa15.68■□□□□ 0.1
TPM3-218ENST00000505010 BIVM-ERCC5R4GMW8 1640 aa15.67■□□□□ 0.1
TPM3-218ENST00000505010 TOP2BQ02880 1626 aa15.65■□□□□ 0.1
TPM3-218ENST00000505010 MAGI1Q96QZ7 1491 aaPredicted RBP15.63■□□□□ 0.09
TPM3-218ENST00000505010 CUX1P39880 1505 aa15.63■□□□□ 0.09
TPM3-218ENST00000505010 GAPVD1Q14C86 1478 aa15.62■□□□□ 0.09
TPM3-218ENST00000505010 WDR97A6NE52 1622 aa15.6■□□□□ 0.09
TPM3-218ENST00000505010 SYNJ2O15056 1496 aa15.59■□□□□ 0.09
TPM3-218ENST00000505010 GRIN2BQ13224 1484 aa15.59■□□□□ 0.09
TPM3-218ENST00000505010 FGD5Q6ZNL6 1462 aa15.57■□□□□ 0.08
TPM3-218ENST00000505010 PBRM1Q86U86 1689 aa15.42■□□□□ 0.06
TPM3-218ENST00000505010 ERCC6L2Q5T890 1561 aa15.41■□□□□ 0.06
TPM3-218ENST00000505010 FAM9AQ8IZU1 332 aaPredicted RBP15.41■□□□□ 0.06
TPM3-218ENST00000505010 RUSC2Q8N2Y8 1516 aa15.38■□□□□ 0.05
TPM3-218ENST00000505010 EEA1Q15075 1411 aa15.38■□□□□ 0.05
TPM3-218ENST00000505010 GRIN2AQ12879 1464 aa15.38■□□□□ 0.05
TPM3-218ENST00000505010 ABCA10Q8WWZ4 1543 aa15.37■□□□□ 0.05
TPM3-218ENST00000505010 CEP170Q5SW79 1584 aa15.36■□□□□ 0.05
TPM3-218ENST00000505010 FAM69CQ0P6D2 419 aa15.34■□□□□ 0.05
TPM3-218ENST00000505010 ABCA5Q8WWZ7 1642 aa15.34■□□□□ 0.05
TPM3-218ENST00000505010 NUP160Q12769 1436 aa15.34■□□□□ 0.05
TPM3-218ENST00000505010 ILDR1Q86SU0 546 aaPredicted RBP15.33■□□□□ 0.04
TPM3-218ENST00000505010 KIF13AQ9H1H9 1805 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms