RNA–Protein interactions for RNA: ENST00000368527.7

TPM3-209, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-209ENST00000368527 NISCHQ9Y2I1 1504 aa21.74■■□□□ 1.07
TPM3-209ENST00000368527 CCDC180Q9P1Z9 1646 aa18.78■□□□□ 0.6
TPM3-209ENST00000368527 AEBP2Q6ZN18 517 aaPredicted RBP18.54■□□□□ 0.56
TPM3-209ENST00000368527 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
TPM3-209ENST00000368527 DCAF1Q9Y4B6 1507 aa18.11■□□□□ 0.49
TPM3-209ENST00000368527 CHIC1Q5VXU3 224 aa17.96■□□□□ 0.47
TPM3-209ENST00000368527 SHROOM4Q9ULL8 1493 aa17.9■□□□□ 0.46
TPM3-209ENST00000368527 MYO15BQ96JP2 1530 aa17.73■□□□□ 0.43
TPM3-209ENST00000368527 DCAF8L2P0C7V8 631 aa17.63■□□□□ 0.41
TPM3-209ENST00000368527 SUPT5HO00267 1087 aaKnown RBP17.55■□□□□ 0.4
TPM3-209ENST00000368527 NACADO15069 1562 aa17.39■□□□□ 0.37
TPM3-209ENST00000368527 ABCC9O60706 1549 aa17.31■□□□□ 0.36
TPM3-209ENST00000368527 SCRIBQ14160 1630 aa17.18■□□□□ 0.34
TPM3-209ENST00000368527 RB1CC1Q8TDY2 1594 aa17.08■□□□□ 0.32
TPM3-209ENST00000368527 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
TPM3-209ENST00000368527 BAZ1AQ9NRL2 1556 aaPredicted RBP16.8■□□□□ 0.28
TPM3-209ENST00000368527 MROH2BQ7Z745 1585 aa16.73■□□□□ 0.27
TPM3-209ENST00000368527 CECR2Q9BXF3 1484 aa16.73■□□□□ 0.27
TPM3-209ENST00000368527 WIZO95785 1651 aa16.59■□□□□ 0.25
TPM3-209ENST00000368527 TRIM41Q8WV44 630 aa16.58■□□□□ 0.24
TPM3-209ENST00000368527 SMARCA4P51532 1647 aa16.58■□□□□ 0.24
TPM3-209ENST00000368527 TOP2AP11388 1531 aaKnown RBP16.57■□□□□ 0.24
TPM3-209ENST00000368527 UNC13AQ9UPW8 1703 aa16.56■□□□□ 0.24
TPM3-209ENST00000368527 EIF4G1Q04637 1599 aaKnown RBP16.44■□□□□ 0.22
TPM3-209ENST00000368527 PEG3Q9GZU2 1588 aa16.43■□□□□ 0.22
TPM3-209ENST00000368527 BICRAQ9NZM4 1560 aa16.43■□□□□ 0.22
TPM3-209ENST00000368527 LOC105371045A0A1W2PR82 267 aa16.39■□□□□ 0.21
TPM3-209ENST00000368527 SMARCA2P51531 1590 aa16.38■□□□□ 0.21
TPM3-209ENST00000368527 HRCP23327 699 aa16.35■□□□□ 0.21
TPM3-209ENST00000368527 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
TPM3-209ENST00000368527 TRIM26Q12899 539 aaPredicted RBP16.3■□□□□ 0.2
TPM3-209ENST00000368527 PCGF6Q9BYE7 350 aa16.28■□□□□ 0.2
TPM3-209ENST00000368527 EEA1Q15075 1411 aa16.27■□□□□ 0.19
TPM3-209ENST00000368527 ATAD2BQ9ULI0 1458 aa16.18■□□□□ 0.18
TPM3-209ENST00000368527 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
TPM3-209ENST00000368527 BAZ1BQ9UIG0 1483 aaKnown RBP16.15■□□□□ 0.18
TPM3-209ENST00000368527 DNAJC5BQ9UF47 199 aa16.14■□□□□ 0.17
TPM3-209ENST00000368527 FAM9AQ8IZU1 332 aaPredicted RBP16.13■□□□□ 0.17
TPM3-209ENST00000368527 ZEB1P37275 1124 aaPredicted RBP16.08■□□□□ 0.16
TPM3-209ENST00000368527 ABCC8Q09428 1581 aa16.08■□□□□ 0.16
TPM3-209ENST00000368527 WRNQ14191 1432 aaPredicted RBP eCLIP16.06■□□□□ 0.169e-7■■■□□ 18.8
TPM3-209ENST00000368527 HMGXB3Q12766 1538 aa16.05■□□□□ 0.16
TPM3-209ENST00000368527 NCAPD3P42695 1498 aa16.02■□□□□ 0.15
TPM3-209ENST00000368527 TNIKQ9UKE5 1360 aa16.01■□□□□ 0.15
TPM3-209ENST00000368527 CSRNP3Q8WYN3 585 aa15.98■□□□□ 0.15
TPM3-209ENST00000368527 GOLGA3Q08378 1498 aa15.96■□□□□ 0.14
TPM3-209ENST00000368527 SOGA1O94964 1423 aa15.92■□□□□ 0.14
TPM3-209ENST00000368527 CEP164Q9UPV0 1460 aa15.91■□□□□ 0.14
TPM3-209ENST00000368527 KIF21BO75037 1637 aa15.91■□□□□ 0.14
TPM3-209ENST00000368527 CEP162Q5TB80 1403 aa15.9■□□□□ 0.14
TPM3-209ENST00000368527 SYNJ1O43426 1573 aa15.88■□□□□ 0.13
TPM3-209ENST00000368527 TOP2BQ02880 1626 aa15.87■□□□□ 0.13
TPM3-209ENST00000368527 BIVM-ERCC5R4GMW8 1640 aa15.84■□□□□ 0.13
TPM3-209ENST00000368527 PHF23Q9BUL5 403 aaPredicted RBP15.82■□□□□ 0.12
TPM3-209ENST00000368527 UBTFP17480 764 aaKnown RBP15.78■□□□□ 0.12
TPM3-209ENST00000368527 CFTRP13569 1480 aa15.78■□□□□ 0.12
TPM3-209ENST00000368527 RUSC2Q8N2Y8 1516 aa15.77■□□□□ 0.11
TPM3-209ENST00000368527 EHMT2Q96KQ7 1210 aa15.76■□□□□ 0.11
TPM3-209ENST00000368527 ERICH3Q5RHP9 1530 aa15.74■□□□□ 0.11
TPM3-209ENST00000368527 PRDM2Q13029 1718 aa15.72■□□□□ 0.11
TPM3-209ENST00000368527 SENP3Q9H4L4 574 aaPredicted RBP15.69■□□□□ 0.1
TPM3-209ENST00000368527 CLIP1P30622 1438 aa15.68■□□□□ 0.1
TPM3-209ENST00000368527 KIF27Q86VH2 1401 aa15.66■□□□□ 0.1
TPM3-209ENST00000368527 PRXQ9BXM0 1461 aa15.65■□□□□ 0.1
TPM3-209ENST00000368527 PPARGC1BQ86YN6 1023 aaKnown RBP15.64■□□□□ 0.09
TPM3-209ENST00000368527 VPS8Q8N3P4 1428 aa15.64■□□□□ 0.09
TPM3-209ENST00000368527 CUX1P39880 1505 aa15.63■□□□□ 0.09
TPM3-209ENST00000368527 CADPSQ9ULU8 1353 aa15.62■□□□□ 0.09
TPM3-209ENST00000368527 RAPGEF2Q9Y4G8 1499 aa15.6■□□□□ 0.09
TPM3-209ENST00000368527 APLP2Q06481 763 aa15.56■□□□□ 0.08
TPM3-209ENST00000368527 CC2D2AQ9P2K1 1620 aa15.53■□□□□ 0.08
TPM3-209ENST00000368527 CCER1Q8TC90 406 aaPredicted RBP15.52■□□□□ 0.08
TPM3-209ENST00000368527 DNMBPQ6XZF7 1577 aa15.41■□□□□ 0.06
TPM3-209ENST00000368527 CUX2O14529 1486 aa15.41■□□□□ 0.06
TPM3-209ENST00000368527 FANCD2Q9BXW9 1451 aa15.41■□□□□ 0.06
TPM3-209ENST00000368527 FGD5Q6ZNL6 1462 aa15.4■□□□□ 0.06
TPM3-209ENST00000368527 ARAP1Q96P48 1450 aa15.4■□□□□ 0.06
TPM3-209ENST00000368527 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.39■□□□□ 0.05
TPM3-209ENST00000368527 LAMC3Q9Y6N6 1575 aa15.39■□□□□ 0.05
TPM3-209ENST00000368527 IGF1RP08069 1367 aa15.38■□□□□ 0.05
TPM3-209ENST00000368527 MAP3K1Q13233 1512 aa15.38■□□□□ 0.05
TPM3-209ENST00000368527 CARMIL1Q5VZK9 1371 aa15.35■□□□□ 0.05
TPM3-209ENST00000368527 ABCA10Q8WWZ4 1543 aa15.34■□□□□ 0.05
TPM3-209ENST00000368527 CLSPNQ9HAW4 1339 aa15.33■□□□□ 0.04
TPM3-209ENST00000368527 ARHGAP35Q9NRY4 1499 aa15.31■□□□□ 0.04
TPM3-209ENST00000368527 CUL7Q14999 1698 aa15.3■□□□□ 0.04
TPM3-209ENST00000368527 TOPBP1Q92547 1522 aa15.3■□□□□ 0.04
TPM3-209ENST00000368527 FHAD1B1AJZ9 1412 aa15.29■□□□□ 0.04
TPM3-209ENST00000368527 PDS5BQ9NTI5 1447 aa15.27■□□□□ 0.04
TPM3-209ENST00000368527 TTBK1Q5TCY1 1321 aaPredicted RBP15.27■□□□□ 0.04
TPM3-209ENST00000368527 EFCAB5A4FU69 1503 aa15.27■□□□□ 0.03
TPM3-209ENST00000368527 RRBP1Q9P2E9 1410 aaKnown RBP15.26■□□□□ 0.03
TPM3-209ENST00000368527 POLA1P09884 1462 aaPredicted RBP15.25■□□□□ 0.03
TPM3-209ENST00000368527 AQRO60306 1485 aaKnown RBP eCLIP15.2■□□□□ 0.022e-7■■□□□ 14.2
TPM3-209ENST00000368527 HNRNPUL2Q1KMD3 747 aaKnown RBP15.19■□□□□ 0.02
TPM3-209ENST00000368527 TIAM1Q13009 1591 aa15.19■□□□□ 0.02
TPM3-209ENST00000368527 WDR97A6NE52 1622 aa15.18■□□□□ 0.02
TPM3-209ENST00000368527 RANGAP1P46060 587 aaPredicted RBP15.18■□□□□ 0.02
TPM3-209ENST00000368527 CCNB3Q8WWL7 1395 aa15.17■□□□□ 0.02
TPM3-209ENST00000368527 FYCO1Q9BQS8 1478 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms