RNA–Protein interactions for RNA: ENST00000482996.5

VARS-225, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-225ENST00000482996 NISCHQ9Y2I1 1504 aa33.95■■■■□ 3.03
VARS-225ENST00000482996 CCDC180Q9P1Z9 1646 aa30.26■■■□□ 2.44
VARS-225ENST00000482996 ABCC9O60706 1549 aa29.86■■■□□ 2.37
VARS-225ENST00000482996 RB1CC1Q8TDY2 1594 aa28.62■■■□□ 2.17
VARS-225ENST00000482996 NACADO15069 1562 aa28.54■■■□□ 2.16
VARS-225ENST00000482996 DCAF8L2P0C7V8 631 aa28.53■■■□□ 2.16
VARS-225ENST00000482996 MYO15BQ96JP2 1530 aa28.29■■■□□ 2.12
VARS-225ENST00000482996 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
VARS-225ENST00000482996 DCAF1Q9Y4B6 1507 aa28.08■■■□□ 2.09
VARS-225ENST00000482996 PABPN1Q86U42 306 aaKnown RBP eCLIP27.88■■■□□ 2.05
VARS-225ENST00000482996 UNC13AQ9UPW8 1703 aa27.88■■■□□ 2.05
VARS-225ENST00000482996 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
VARS-225ENST00000482996 SCRIBQ14160 1630 aa27.6■■■□□ 2.01
VARS-225ENST00000482996 DNAJC5BQ9UF47 199 aa27.58■■■□□ 2.01
VARS-225ENST00000482996 SHROOM4Q9ULL8 1493 aa27.47■■□□□ 1.99
VARS-225ENST00000482996 EIF4G1Q04637 1599 aaKnown RBP27.03■■□□□ 1.92
VARS-225ENST00000482996 CC2D2AQ9P2K1 1620 aa26.97■■□□□ 1.91
VARS-225ENST00000482996 CECR2Q9BXF3 1484 aa26.86■■□□□ 1.89
VARS-225ENST00000482996 SMARCA4P51532 1647 aa26.38■■□□□ 1.81
VARS-225ENST00000482996 BAZ1AQ9NRL2 1556 aaPredicted RBP26.34■■□□□ 1.81
VARS-225ENST00000482996 NCAPD3P42695 1498 aa26.34■■□□□ 1.81
VARS-225ENST00000482996 ATAD2BQ9ULI0 1458 aa26.31■■□□□ 1.8
VARS-225ENST00000482996 SMARCA2P51531 1590 aa26.29■■□□□ 1.8
VARS-225ENST00000482996 HMGXB3Q12766 1538 aa26.18■■□□□ 1.78
VARS-225ENST00000482996 MROH2BQ7Z745 1585 aa26.15■■□□□ 1.78
VARS-225ENST00000482996 PEG3Q9GZU2 1588 aa26.12■■□□□ 1.77
VARS-225ENST00000482996 BAZ1BQ9UIG0 1483 aaKnown RBP26.11■■□□□ 1.77
VARS-225ENST00000482996 WIZO95785 1651 aa25.83■■□□□ 1.73
VARS-225ENST00000482996 RSF1Q96T23 1441 aaPredicted RBP25.79■■□□□ 1.72
VARS-225ENST00000482996 ERCC6Q03468 1493 aa25.79■■□□□ 1.72
VARS-225ENST00000482996 NESP48681 1621 aa25.74■■□□□ 1.71
VARS-225ENST00000482996 LAMC3Q9Y6N6 1575 aa25.67■■□□□ 1.7
VARS-225ENST00000482996 TOP2AP11388 1531 aaKnown RBP25.58■■□□□ 1.69
VARS-225ENST00000482996 CUX2O14529 1486 aa25.58■■□□□ 1.69
VARS-225ENST00000482996 CADPSQ9ULU8 1353 aa25.57■■□□□ 1.68
VARS-225ENST00000482996 PDS5BQ9NTI5 1447 aa25.55■■□□□ 1.68
VARS-225ENST00000482996 KIF21AQ7Z4S6 1674 aa25.41■■□□□ 1.66
VARS-225ENST00000482996 THOC2Q8NI27 1593 aaKnown RBP25.39■■□□□ 1.65
VARS-225ENST00000482996 CFTRP13569 1480 aa25.35■■□□□ 1.65
VARS-225ENST00000482996 CCDC88BA6NC98 1476 aa25.29■■□□□ 1.64
VARS-225ENST00000482996 FANCD2Q9BXW9 1451 aa25.28■■□□□ 1.64
VARS-225ENST00000482996 MRC2Q9UBG0 1479 aa25.28■■□□□ 1.64
VARS-225ENST00000482996 CEP164Q9UPV0 1460 aa25.27■■□□□ 1.64
VARS-225ENST00000482996 DNAJC5Q9H3Z4 198 aa25.25■■□□□ 1.63
VARS-225ENST00000482996 WDR62O43379 1518 aa25.17■■□□□ 1.62
VARS-225ENST00000482996 PRDM2Q13029 1718 aa25.09■■□□□ 1.61
VARS-225ENST00000482996 SUPT5HO00267 1087 aaKnown RBP25.02■■□□□ 1.6
VARS-225ENST00000482996 URB2Q14146 1524 aaKnown RBP25.01■■□□□ 1.59
VARS-225ENST00000482996 ABCC8Q09428 1581 aa24.85■■□□□ 1.57
VARS-225ENST00000482996 TOPBP1Q92547 1522 aa24.83■■□□□ 1.57
VARS-225ENST00000482996 DNMBPQ6XZF7 1577 aa24.79■■□□□ 1.56
VARS-225ENST00000482996 IFT140Q96RY7 1462 aa24.76■■□□□ 1.55
VARS-225ENST00000482996 ZNF608Q9ULD9 1512 aaPredicted RBP24.62■■□□□ 1.53
VARS-225ENST00000482996 POLA1P09884 1462 aaPredicted RBP24.61■■□□□ 1.53
VARS-225ENST00000482996 TARBP1Q13395 1621 aaKnown RBP24.55■■□□□ 1.52
VARS-225ENST00000482996 CUX1P39880 1505 aa24.55■■□□□ 1.52
VARS-225ENST00000482996 SOGA1O94964 1423 aa24.53■■□□□ 1.52
VARS-225ENST00000482996 FGD5Q6ZNL6 1462 aa24.51■■□□□ 1.51
VARS-225ENST00000482996 OSCARQ8IYS5 282 aa24.51■■□□□ 1.51
VARS-225ENST00000482996 EIF4G3O43432 1585 aaKnown RBP24.5■■□□□ 1.51
VARS-225ENST00000482996 RAD54L2Q9Y4B4 1467 aa24.5■■□□□ 1.51
VARS-225ENST00000482996 AQRO60306 1485 aaKnown RBP eCLIP24.48■■□□□ 1.513e-7■■■■■ 31.4
VARS-225ENST00000482996 TDRD9Q8NDG6 1382 aaKnown RBP24.41■■□□□ 1.5
VARS-225ENST00000482996 WDR97A6NE52 1622 aa24.38■■□□□ 1.49
VARS-225ENST00000482996 WRNQ14191 1432 aaPredicted RBP eCLIP24.35■■□□□ 1.49
VARS-225ENST00000482996 FBLN2P98095 1184 aa24.28■■□□□ 1.48
VARS-225ENST00000482996 TOP2BQ02880 1626 aa24.28■■□□□ 1.48
VARS-225ENST00000482996 GRIN2BQ13224 1484 aa24.27■■□□□ 1.48
VARS-225ENST00000482996 ABCA10Q8WWZ4 1543 aa24.27■■□□□ 1.48
VARS-225ENST00000482996 BIVM-ERCC5R4GMW8 1640 aa24.26■■□□□ 1.47
VARS-225ENST00000482996 SNAPC4Q5SXM2 1469 aa24.25■■□□□ 1.47
VARS-225ENST00000482996 SYNJ1O43426 1573 aa24.25■■□□□ 1.47
VARS-225ENST00000482996 GAPVD1Q14C86 1478 aa24.24■■□□□ 1.47
VARS-225ENST00000482996 CHD1O14646 1710 aa24.22■■□□□ 1.47
VARS-225ENST00000482996 MAGI1Q96QZ7 1491 aaPredicted RBP24.22■■□□□ 1.47
VARS-225ENST00000482996 CHMP7Q8WUX9 453 aaPredicted RBP24.18■■□□□ 1.46
VARS-225ENST00000482996 TRIM41Q8WV44 630 aa24.16■■□□□ 1.46
VARS-225ENST00000482996 ABCA5Q8WWZ7 1642 aa24.16■■□□□ 1.46
VARS-225ENST00000482996 PBRM1Q86U86 1689 aa24.14■■□□□ 1.45
VARS-225ENST00000482996 SYNJ2O15056 1496 aa24.13■■□□□ 1.45
VARS-225ENST00000482996 RIMBP3CA6NJZ7 1639 aa24.06■■□□□ 1.44
VARS-225ENST00000482996 RIMBP3BA6NNM3 1639 aa24.06■■□□□ 1.44
VARS-225ENST00000482996 RIMBP3Q9UFD9 1639 aa24.06■■□□□ 1.44
VARS-225ENST00000482996 ARHGEF11O15085 1522 aa24.06■■□□□ 1.44
VARS-225ENST00000482996 ERICH3Q5RHP9 1530 aa23.98■■□□□ 1.43
VARS-225ENST00000482996 CLASP1Q7Z460 1538 aa23.98■■□□□ 1.43
VARS-225ENST00000482996 ADAMTS12P58397 1594 aa23.96■■□□□ 1.43
VARS-225ENST00000482996 FHAD1B1AJZ9 1412 aa23.96■■□□□ 1.43
VARS-225ENST00000482996 GRIN2AQ12879 1464 aa23.94■■□□□ 1.42
VARS-225ENST00000482996 CYB5RLQ6IPT4 315 aa23.89■■□□□ 1.41
VARS-225ENST00000482996 KIF27Q86VH2 1401 aa23.87■■□□□ 1.41
VARS-225ENST00000482996 ARAP1Q96P48 1450 aa23.85■■□□□ 1.41
VARS-225ENST00000482996 NUP160Q12769 1436 aa23.84■■□□□ 1.41
VARS-225ENST00000482996 CEP170Q5SW79 1584 aa23.79■■□□□ 1.4
VARS-225ENST00000482996 IGF1RP08069 1367 aa23.78■■□□□ 1.4
VARS-225ENST00000482996 CUL7Q14999 1698 aa23.71■■□□□ 1.39
VARS-225ENST00000482996 CARMIL1Q5VZK9 1371 aa23.65■■□□□ 1.38
VARS-225ENST00000482996 SHROOM2Q13796 1616 aa23.64■■□□□ 1.38
VARS-225ENST00000482996 JPH4Q96JJ6 628 aa23.63■■□□□ 1.37
VARS-225ENST00000482996 ERCC6L2Q5T890 1561 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms