RNA–Protein interactions for RNA: ENST00000480024.1

FN1-220, Transcript of fibronectin 1, humanhuman

TSL 2

Gene FN1, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-220ENST00000480024 NISCHQ9Y2I1 1504 aa16.72■□□□□ 0.27
FN1-220ENST00000480024 CCDC180Q9P1Z9 1646 aa15.02□□□□□ -0.01
FN1-220ENST00000480024 ABCC9O60706 1549 aa14.96□□□□□ -0.02
FN1-220ENST00000480024 RB1CC1Q8TDY2 1594 aa14.26□□□□□ -0.13
FN1-220ENST00000480024 NACADO15069 1562 aa14.15□□□□□ -0.14
FN1-220ENST00000480024 DCAF8L2P0C7V8 631 aa14.07□□□□□ -0.16
FN1-220ENST00000480024 UNC13AQ9UPW8 1703 aa13.98□□□□□ -0.17
FN1-220ENST00000480024 MYO15BQ96JP2 1530 aa13.95□□□□□ -0.18
FN1-220ENST00000480024 DNAJC5BQ9UF47 199 aa13.93□□□□□ -0.18
FN1-220ENST00000480024 PABPN1Q86U42 306 aaKnown RBP eCLIP13.91□□□□□ -0.18
FN1-220ENST00000480024 ZCCHC6Q5VYS8 1495 aaKnown RBP13.89□□□□□ -0.19
FN1-220ENST00000480024 BICRAQ9NZM4 1560 aa13.84□□□□□ -0.19
FN1-220ENST00000480024 DCAF1Q9Y4B6 1507 aa13.8□□□□□ -0.2
FN1-220ENST00000480024 SCRIBQ14160 1630 aa13.72□□□□□ -0.21
FN1-220ENST00000480024 SHROOM4Q9ULL8 1493 aa13.64□□□□□ -0.23
FN1-220ENST00000480024 CC2D2AQ9P2K1 1620 aa13.52□□□□□ -0.25
FN1-220ENST00000480024 EIF4G1Q04637 1599 aaKnown RBP13.5□□□□□ -0.25
FN1-220ENST00000480024 CECR2Q9BXF3 1484 aa13.46□□□□□ -0.25
FN1-220ENST00000480024 SMARCA4P51532 1647 aa13.07□□□□□ -0.32
FN1-220ENST00000480024 NCAPD3P42695 1498 aa13.04□□□□□ -0.32
FN1-220ENST00000480024 ATAD2BQ9ULI0 1458 aa13.03□□□□□ -0.32
FN1-220ENST00000480024 SMARCA2P51531 1590 aa13.01□□□□□ -0.33
FN1-220ENST00000480024 BAZ1AQ9NRL2 1556 aaPredicted RBP12.99□□□□□ -0.33
FN1-220ENST00000480024 HMGXB3Q12766 1538 aa12.99□□□□□ -0.33
FN1-220ENST00000480024 BAZ1BQ9UIG0 1483 aaKnown RBP12.93□□□□□ -0.34
FN1-220ENST00000480024 ERCC6Q03468 1493 aa12.92□□□□□ -0.34
FN1-220ENST00000480024 MROH2BQ7Z745 1585 aa12.9□□□□□ -0.34
FN1-220ENST00000480024 PEG3Q9GZU2 1588 aa12.9□□□□□ -0.34
FN1-220ENST00000480024 NESP48681 1621 aa12.88□□□□□ -0.35
FN1-220ENST00000480024 CUX2O14529 1486 aa12.85□□□□□ -0.35
FN1-220ENST00000480024 LAMC3Q9Y6N6 1575 aa12.77□□□□□ -0.36
FN1-220ENST00000480024 WIZO95785 1651 aa12.77□□□□□ -0.36
FN1-220ENST00000480024 THOC2Q8NI27 1593 aaKnown RBP12.75□□□□□ -0.37
FN1-220ENST00000480024 KIF21AQ7Z4S6 1674 aa12.74□□□□□ -0.37
FN1-220ENST00000480024 DNAJC5Q9H3Z4 198 aa12.74□□□□□ -0.37
FN1-220ENST00000480024 PDS5BQ9NTI5 1447 aa12.67□□□□□ -0.38
FN1-220ENST00000480024 CADPSQ9ULU8 1353 aa12.65□□□□□ -0.38
FN1-220ENST00000480024 RSF1Q96T23 1441 aaPredicted RBP12.63□□□□□ -0.39
FN1-220ENST00000480024 TOP2AP11388 1531 aaKnown RBP12.6□□□□□ -0.39
FN1-220ENST00000480024 MRC2Q9UBG0 1479 aa12.59□□□□□ -0.39
FN1-220ENST00000480024 WDR62O43379 1518 aa12.57□□□□□ -0.4
FN1-220ENST00000480024 CEP164Q9UPV0 1460 aa12.56□□□□□ -0.4
FN1-220ENST00000480024 FANCD2Q9BXW9 1451 aa12.54□□□□□ -0.4
FN1-220ENST00000480024 CFTRP13569 1480 aa12.53□□□□□ -0.4
FN1-220ENST00000480024 PRDM2Q13029 1718 aa12.48□□□□□ -0.41
FN1-220ENST00000480024 URB2Q14146 1524 aaKnown RBP12.44□□□□□ -0.42
FN1-220ENST00000480024 CCDC88BA6NC98 1476 aa12.42□□□□□ -0.42
FN1-220ENST00000480024 TOPBP1Q92547 1522 aa12.31□□□□□ -0.44
FN1-220ENST00000480024 IFT140Q96RY7 1462 aa12.29□□□□□ -0.44
FN1-220ENST00000480024 ZNF608Q9ULD9 1512 aaPredicted RBP12.28□□□□□ -0.44
FN1-220ENST00000480024 DNMBPQ6XZF7 1577 aa12.28□□□□□ -0.44
FN1-220ENST00000480024 TRIM41Q8WV44 630 aa12.25□□□□□ -0.45
FN1-220ENST00000480024 EIF4G3O43432 1585 aaKnown RBP12.25□□□□□ -0.45
FN1-220ENST00000480024 ABCC8Q09428 1581 aa12.25□□□□□ -0.45
FN1-220ENST00000480024 OSCARQ8IYS5 282 aa12.23□□□□□ -0.45
FN1-220ENST00000480024 TARBP1Q13395 1621 aaKnown RBP12.21□□□□□ -0.46
FN1-220ENST00000480024 POLA1P09884 1462 aaPredicted RBP12.19□□□□□ -0.46
FN1-220ENST00000480024 CHD1O14646 1710 aa12.16□□□□□ -0.46
FN1-220ENST00000480024 AQRO60306 1485 aaKnown RBP eCLIP12.15□□□□□ -0.466e-14■■■■■ 28.4
FN1-220ENST00000480024 RIMBP3CA6NJZ7 1639 aa12.15□□□□□ -0.47
FN1-220ENST00000480024 RIMBP3BA6NNM3 1639 aa12.15□□□□□ -0.47
FN1-220ENST00000480024 RIMBP3Q9UFD9 1639 aa12.15□□□□□ -0.47
FN1-220ENST00000480024 RAD54L2Q9Y4B4 1467 aa12.14□□□□□ -0.47
FN1-220ENST00000480024 FGD5Q6ZNL6 1462 aa12.13□□□□□ -0.47
FN1-220ENST00000480024 CUX1P39880 1505 aa12.12□□□□□ -0.47
FN1-220ENST00000480024 SUPT5HO00267 1087 aaKnown RBP12.11□□□□□ -0.47
FN1-220ENST00000480024 ARHGEF11O15085 1522 aa12.1□□□□□ -0.47
FN1-220ENST00000480024 SOGA1O94964 1423 aa12.1□□□□□ -0.47
FN1-220ENST00000480024 TDRD9Q8NDG6 1382 aaKnown RBP12.08□□□□□ -0.48
FN1-220ENST00000480024 WDR97A6NE52 1622 aa12.08□□□□□ -0.48
FN1-220ENST00000480024 SNAPC4Q5SXM2 1469 aa12.07□□□□□ -0.48
FN1-220ENST00000480024 FBLN2P98095 1184 aa12.06□□□□□ -0.48
FN1-220ENST00000480024 PBRM1Q86U86 1689 aa12.03□□□□□ -0.48
FN1-220ENST00000480024 GRIN2BQ13224 1484 aa12.02□□□□□ -0.49
FN1-220ENST00000480024 MAGI1Q96QZ7 1491 aaPredicted RBP12.02□□□□□ -0.49
FN1-220ENST00000480024 ABCA5Q8WWZ7 1642 aa11.99□□□□□ -0.49
FN1-220ENST00000480024 SYNJ1O43426 1573 aa11.98□□□□□ -0.49
FN1-220ENST00000480024 CLASP1Q7Z460 1538 aa11.98□□□□□ -0.49
FN1-220ENST00000480024 GAPVD1Q14C86 1478 aa11.98□□□□□ -0.49
FN1-220ENST00000480024 ARAP1Q96P48 1450 aa11.98□□□□□ -0.49
FN1-220ENST00000480024 ABCA10Q8WWZ4 1543 aa11.97□□□□□ -0.49
FN1-220ENST00000480024 SYNJ2O15056 1496 aa11.97□□□□□ -0.49
FN1-220ENST00000480024 CYB5RLQ6IPT4 315 aa11.96□□□□□ -0.49
FN1-220ENST00000480024 CHMP7Q8WUX9 453 aaPredicted RBP11.96□□□□□ -0.49
FN1-220ENST00000480024 BIVM-ERCC5R4GMW8 1640 aa11.96□□□□□ -0.5
FN1-220ENST00000480024 TOP2BQ02880 1626 aa11.95□□□□□ -0.5
FN1-220ENST00000480024 WRNQ14191 1432 aaPredicted RBP eCLIP11.93□□□□□ -0.5
FN1-220ENST00000480024 ADAMTS12P58397 1594 aa11.9□□□□□ -0.5
FN1-220ENST00000480024 GRIN2AQ12879 1464 aa11.87□□□□□ -0.51
FN1-220ENST00000480024 CEP170Q5SW79 1584 aa11.84□□□□□ -0.51
FN1-220ENST00000480024 ERICH3Q5RHP9 1530 aa11.83□□□□□ -0.52
FN1-220ENST00000480024 TRHP20396 242 aaPredicted RBP11.83□□□□□ -0.52
FN1-220ENST00000480024 FHAD1B1AJZ9 1412 aa11.82□□□□□ -0.52
FN1-220ENST00000480024 ERCC6L2Q5T890 1561 aa11.81□□□□□ -0.52
FN1-220ENST00000480024 NUP160Q12769 1436 aa11.81□□□□□ -0.52
FN1-220ENST00000480024 SHROOM2Q13796 1616 aa11.78□□□□□ -0.52
FN1-220ENST00000480024 RUSC2Q8N2Y8 1516 aa11.74□□□□□ -0.53
FN1-220ENST00000480024 CUL7Q14999 1698 aa11.7□□□□□ -0.54
FN1-220ENST00000480024 PRG4Q92954 1404 aaPredicted RBP11.69□□□□□ -0.54
FN1-220ENST00000480024 KIF27Q86VH2 1401 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms