Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 CAND1-207ENST00000544619 4091 ntTSL 1 (best)3.03□□□□□ -1.922e-6■■□□□ 11.9
LIN28BQ6ZN17 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.052e-9■■□□□ 11.9
LIN28BQ6ZN17 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.562e-8■■□□□ 11.9
LIN28BQ6ZN17 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.892e-8■■□□□ 11.9
LIN28BQ6ZN17 DUSP3-202ENST00000590342 2077 ntTSL 1 (best)14.97□□□□□ -0.011e-11■■□□□ 11.9
LIN28BQ6ZN17 DUSP3-203ENST00000590753 1019 ntTSL 510.23□□□□□ -0.771e-11■■□□□ 11.9
LIN28BQ6ZN17 DUSP3-204ENST00000590935 3666 ntTSL 59.21□□□□□ -0.931e-11■■□□□ 11.9
LIN28BQ6ZN17 DUSP3-201ENST00000226004 4110 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.941e-11■■□□□ 11.9
LIN28BQ6ZN17 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.62e-6■■□□□ 11.8
LIN28BQ6ZN17 LDHB-201ENST00000350669 1303 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.832e-6■■□□□ 11.8
LIN28BQ6ZN17 PTPRK-222ENST00000532751 563 ntTSL 424.5■■□□□ 1.514e-7■■□□□ 11.8
LIN28BQ6ZN17 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.47■□□□□ 0.874e-7■■□□□ 11.8
LIN28BQ6ZN17 PTPRK-208ENST00000392449 1456 ntTSL 219.05■□□□□ 0.644e-7■■□□□ 11.8
LIN28BQ6ZN17 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.123e-7■■□□□ 11.8
LIN28BQ6ZN17 CPOX-203ENST00000512905 593 ntTSL 53.94□□□□□ -1.781e-6■■□□□ 11.8
LIN28BQ6ZN17 TOP1MT-216ENST00000522121 874 ntTSL 321.08■□□□□ 0.973e-7■■□□□ 11.8
LIN28BQ6ZN17 TOP1MT-209ENST00000519591 1007 ntTSL 516.27■□□□□ 0.23e-7■■□□□ 11.8
LIN28BQ6ZN17 TOP1MT-217ENST00000523417 698 ntTSL 314.51□□□□□ -0.093e-7■■□□□ 11.8
LIN28BQ6ZN17 ASNS-212ENST00000453600 573 ntTSL 316.07■□□□□ 0.168e-11■■□□□ 11.8
LIN28BQ6ZN17 RTN4-214ENST00000486085 955 ntTSL 35.83□□□□□ -1.484e-7■■□□□ 11.8
LIN28BQ6ZN17 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.065e-7■■□□□ 11.8
LIN28BQ6ZN17 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.215e-7■■□□□ 11.8
LIN28BQ6ZN17 TAF12-203ENST00000471683 844 ntTSL 36.32□□□□□ -1.45e-7■■□□□ 11.8
LIN28BQ6ZN17 SND1-204ENST00000465900 630 ntTSL 46.34□□□□□ -1.391e-10■■□□□ 11.8
LIN28BQ6ZN17 RPL23-205ENST00000470646 333 ntTSL 314.68□□□□□ -0.063e-27■■□□□ 11.8
LIN28BQ6ZN17 RPL23-202ENST00000378096 392 ntTSL 313.63□□□□□ -0.233e-27■■□□□ 11.8
LIN28BQ6ZN17 RPL23-201ENST00000245857 588 ntTSL 3 BASIC11.12□□□□□ -0.633e-27■■□□□ 11.8
LIN28BQ6ZN17 EIF3M-213ENST00000533439 749 ntTSL 516.96■□□□□ 0.314e-9■■□□□ 11.8
LIN28BQ6ZN17 ZRANB2-202ENST00000370920 3078 ntAPPRIS P4 TSL 1 (best) BASIC9.37□□□□□ -0.913e-7■■□□□ 11.8
LIN28BQ6ZN17 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.823e-7■■□□□ 11.8
LIN28BQ6ZN17 ANKRD11-214ENST00000568100 878 ntTSL 220.09■□□□□ 0.817e-9■■□□□ 11.8
LIN28BQ6ZN17 HSP90B1-206ENST00000550479 698 ntTSL 25.18□□□□□ -1.583e-12■■□□□ 11.8
LIN28BQ6ZN17 EIF3M-211ENST00000532054 532 ntTSL 217.94■□□□□ 0.464e-9■■□□□ 11.8
LIN28BQ6ZN17 EIF3M-209ENST00000531186 565 ntTSL 215.8■□□□□ 0.124e-9■■□□□ 11.8
LIN28BQ6ZN17 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.054e-9■■□□□ 11.8
LIN28BQ6ZN17 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.622e-6■■□□□ 11.8
LIN28BQ6ZN17 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.292e-6■■□□□ 11.8
LIN28BQ6ZN17 STX17-201ENST00000259400 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.622e-6■■□□□ 11.8
LIN28BQ6ZN17 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.04■□□□□ 0.488e-8■■□□□ 11.8
LIN28BQ6ZN17 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.428e-8■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-214ENST00000619962 559 ntTSL 520.75■□□□□ 0.914e-6■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-202ENST00000461359 763 ntTSL 220.75■□□□□ 0.914e-6■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.774e-6■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-205ENST00000472584 722 ntTSL 219.17■□□□□ 0.664e-6■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-207ENST00000486637 852 ntTSL 318.22■□□□□ 0.514e-6■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-206ENST00000477060 608 ntTSL 318.05■□□□□ 0.484e-6■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-210ENST00000491981 612 ntTSL 516.64■□□□□ 0.254e-6■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-208ENST00000488137 717 ntTSL 314.76□□□□□ -0.054e-6■■□□□ 11.8
LIN28BQ6ZN17 C1orf109-209ENST00000491797 649 ntTSL 214.49□□□□□ -0.094e-6■■□□□ 11.8
LIN28BQ6ZN17 QARS-214ENST00000478561 670 ntTSL 317.01■□□□□ 0.313e-9■■□□□ 11.8
LIN28BQ6ZN17 QARS-228ENST00000634432 582 ntTSL 310.96□□□□□ -0.653e-9■■□□□ 11.8
LIN28BQ6ZN17 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.635e-7■■□□□ 11.7
LIN28BQ6ZN17 HNRNPK-206ENST00000457156 1283 ntTSL 520.69■□□□□ 0.91e-8■■□□□ 11.7
LIN28BQ6ZN17 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.61e-8■■□□□ 11.7
LIN28BQ6ZN17 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.42e-11■■□□□ 11.7
LIN28BQ6ZN17 PRKCI-205ENST00000485837 589 ntTSL 211.11□□□□□ -0.632e-11■■□□□ 11.7
LIN28BQ6ZN17 PRKCI-204ENST00000483697 267 ntTSL 38.43□□□□□ -1.062e-11■■□□□ 11.7
LIN28BQ6ZN17 PRKCI-202ENST00000476635 3650 ntTSL 1 (best)6.71□□□□□ -1.332e-11■■□□□ 11.7
LIN28BQ6ZN17 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.81■■□□□ 1.43e-6■■□□□ 11.7
LIN28BQ6ZN17 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.933e-6■■□□□ 11.7
LIN28BQ6ZN17 HM13-221ENST00000493364 372 ntTSL 211.67□□□□□ -0.545e-11■■□□□ 11.7
LIN28BQ6ZN17 AES-204ENST00000585782 505 ntTSL 216.7■□□□□ 0.263e-10■■□□□ 11.7
LIN28BQ6ZN17 AES-205ENST00000586003 367 ntTSL 216.05■□□□□ 0.163e-10■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.01□□□□□ -0.012e-8■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-206ENST00000543881 1450 ntTSL 2 BASIC13.75□□□□□ -0.212e-8■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-208ENST00000558970 730 ntTSL 513.65□□□□□ -0.222e-8■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.04□□□□□ -0.322e-8■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-210ENST00000560825 1412 ntTSL 1 (best) BASIC12.84□□□□□ -0.352e-8■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-203ENST00000380877 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.462e-8■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-205ENST00000429662 1392 ntTSL 1 (best) BASIC8.53□□□□□ -1.042e-8■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-207ENST00000558335 406 ntTSL 35.1□□□□□ -1.592e-8■■□□□ 11.7
LIN28BQ6ZN17 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.24□□□□□ -1.732e-8■■□□□ 11.7
LIN28BQ6ZN17 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.092e-11■■□□□ 11.7
LIN28BQ6ZN17 MCM4-205ENST00000518680 862 ntTSL 513.33□□□□□ -0.282e-11■■□□□ 11.7
LIN28BQ6ZN17 MCM4-209ENST00000520637 839 ntTSL 212.48□□□□□ -0.412e-11■■□□□ 11.7
LIN28BQ6ZN17 ANAPC5-203ENST00000422342 1141 ntTSL 211.55□□□□□ -0.563e-6■■□□□ 11.7
LIN28BQ6ZN17 PAICS-205ENST00000508554 698 ntTSL 29.98□□□□□ -0.812e-11■■□□□ 11.7
LIN28BQ6ZN17 ANAPC5-208ENST00000535482 2077 ntTSL 2 BASIC8.18□□□□□ -1.13e-6■■□□□ 11.7
LIN28BQ6ZN17 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.243e-16■■□□□ 11.7
LIN28BQ6ZN17 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC9.88□□□□□ -0.832e-18■■□□□ 11.7
LIN28BQ6ZN17 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.152e-18■■□□□ 11.7
LIN28BQ6ZN17 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.222e-18■■□□□ 11.7
LIN28BQ6ZN17 NUP214-217ENST00000526412 551 ntTSL 54.19□□□□□ -1.742e-18■■□□□ 11.7
LIN28BQ6ZN17 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.15■□□□□ 0.664e-8■■□□□ 11.7
LIN28BQ6ZN17 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.73■□□□□ 0.114e-8■■□□□ 11.7
LIN28BQ6ZN17 ARHGAP5-201ENST00000216743 3207 nt4.6□□□□□ -1.674e-8■■□□□ 11.7
LIN28BQ6ZN17 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.54□□□□□ -24e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.38■■■□□ 2.291e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-207ENST00000414664 1070 ntTSL 528.23■■■□□ 2.111e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-212ENST00000430570 1332 ntTSL 527.84■■■□□ 2.051e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-217ENST00000439669 784 ntTSL 527.05■■□□□ 1.921e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-205ENST00000401607 1795 ntTSL 526.79■■□□□ 1.881e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-216ENST00000437340 1755 ntTSL 1 (best)26.2■■□□□ 1.791e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-220ENST00000458038 596 ntTSL 324.81■■□□□ 1.561e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-211ENST00000420363 821 ntTSL 223.92■■□□□ 1.421e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-219ENST00000440240 746 ntTSL 523.85■■□□□ 1.411e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.351e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-204ENST00000397443 1928 ntAPPRIS P1 TSL 522.74■■□□□ 1.231e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-210ENST00000416778 744 ntTSL 220.4■□□□□ 0.861e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-213ENST00000434795 831 ntTSL 320.4■□□□□ 0.861e-8■■□□□ 11.7
Retrieved 100 of 21,972 protein–RNA pairs in 657.4 ms