RNA–Protein interactions for RNA: ENST00000263966.7

USP13-201, Transcript of ubiquitin specific peptidase 13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP13, Length 8,323 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP13-201ENST00000263966 DCAF8L2P0C7V8 631 aa28.12■■■□□ 2.09
USP13-201ENST00000263966 PELP1Q8IZL8 1130 aaKnown RBP26.72■■□□□ 1.87
USP13-201ENST00000263966 FAM9AQ8IZU1 332 aaPredicted RBP26.62■■□□□ 1.85
USP13-201ENST00000263966 APLP2Q06481 763 aa26.08■■□□□ 1.76
USP13-201ENST00000263966 SUPT5HO00267 1087 aaKnown RBP25.84■■□□□ 1.73
USP13-201ENST00000263966 EHMT2Q96KQ7 1210 aa25.54■■□□□ 1.68
USP13-201ENST00000263966 CCER1Q8TC90 406 aaPredicted RBP25.53■■□□□ 1.68
USP13-201ENST00000263966 ERICH6Q7L0X2 663 aa25.43■■□□□ 1.66
USP13-201ENST00000263966 SHROOM4Q9ULL8 1493 aa25.14■■□□□ 1.62
USP13-201ENST00000263966 ATP1B4Q9UN42 357 aaPredicted RBP25.02■■□□□ 1.6
USP13-201ENST00000263966 NISCHQ9Y2I1 1504 aa24.99■■□□□ 1.59
USP13-201ENST00000263966 TTBK1Q5TCY1 1321 aaPredicted RBP24.71■■□□□ 1.55
USP13-201ENST00000263966 NEFLP07196 543 aa24.71■■□□□ 1.55
USP13-201ENST00000263966 MYT1LQ9UL68 1186 aa24.7■■□□□ 1.54
USP13-201ENST00000263966 CENPBP07199 599 aaPredicted RBP24.68■■□□□ 1.54
USP13-201ENST00000263966 RANGAP1P46060 587 aaPredicted RBP24.68■■□□□ 1.54
USP13-201ENST00000263966 DAXXQ9UER7 740 aaPredicted RBP24.57■■□□□ 1.52
USP13-201ENST00000263966 PCGF6Q9BYE7 350 aa24.45■■□□□ 1.5
USP13-201ENST00000263966 YTHDC1Q96MU7 727 aaKnown RBP24.36■■□□□ 1.49
USP13-201ENST00000263966 ZEB1P37275 1124 aaPredicted RBP24.35■■□□□ 1.49
USP13-201ENST00000263966 UBTFP17480 764 aaKnown RBP24.32■■□□□ 1.48
USP13-201ENST00000263966 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.17■■□□□ 1.46
USP13-201ENST00000263966 HNRNPUL2Q1KMD3 747 aaKnown RBP24.17■■□□□ 1.46
USP13-201ENST00000263966 TRIM41Q8WV44 630 aa24.14■■□□□ 1.45
USP13-201ENST00000263966 SLC4A1APQ9BWU0 796 aaKnown RBP24.12■■□□□ 1.45
USP13-201ENST00000263966 CHIC1Q5VXU3 224 aa24.09■■□□□ 1.45
USP13-201ENST00000263966 POLR3GLQ9BT43 218 aa24■■□□□ 1.43
USP13-201ENST00000263966 MYT1Q01538 1121 aa23.92■■□□□ 1.42
USP13-201ENST00000263966 ZNF316A6NFI3 1004 aaPredicted RBP23.8■■□□□ 1.4
USP13-201ENST00000263966 CLSPNQ9HAW4 1339 aa23.77■■□□□ 1.4
USP13-201ENST00000263966 ZBTB47Q9UFB7 747 aaPredicted RBP23.69■■□□□ 1.38
USP13-201ENST00000263966 ITGAEP38570 1179 aa23.54■■□□□ 1.36
USP13-201ENST00000263966 SLC24A1O60721 1099 aa23.53■■□□□ 1.36
USP13-201ENST00000263966 CNGB1Q14028 1251 aaPredicted RBP23.46■■□□□ 1.35
USP13-201ENST00000263966 RTL5Q5HYW3 569 aaPredicted RBP23.45■■□□□ 1.34
USP13-201ENST00000263966 BCANQ96GW7 911 aa23.4■■□□□ 1.34
USP13-201ENST00000263966 NEFMP07197 916 aa23.38■■□□□ 1.33
USP13-201ENST00000263966 ESF1Q9H501 851 aaKnown RBP23.15■■□□□ 1.3
USP13-201ENST00000263966 PPARGC1BQ86YN6 1023 aaKnown RBP23.11■■□□□ 1.29
USP13-201ENST00000263966 CANXP27824 592 aaKnown RBP23.1■■□□□ 1.29
USP13-201ENST00000263966 TRIM52Q96A61 297 aa23.06■■□□□ 1.28
USP13-201ENST00000263966 FAM50AQ14320 339 aaKnown RBP23■■□□□ 1.27
USP13-201ENST00000263966 TRIM26Q12899 539 aaPredicted RBP22.99■■□□□ 1.27
USP13-201ENST00000263966 BCL11AQ9H165 835 aa22.95■■□□□ 1.26
USP13-201ENST00000263966 FBLN2P98095 1184 aa22.91■■□□□ 1.26
USP13-201ENST00000263966 CDK11BP21127 795 aaKnown RBP22.84■■□□□ 1.25
USP13-201ENST00000263966 CDK11AQ9UQ88 783 aaPredicted RBP22.84■■□□□ 1.25
USP13-201ENST00000263966 ANP32BQ92688 251 aaKnown RBP22.82■■□□□ 1.24
USP13-201ENST00000263966 ZNF326Q5BKZ1 582 aaKnown RBP22.8■■□□□ 1.24
USP13-201ENST00000263966 STAG3Q9UJ98 1225 aa22.8■■□□□ 1.24
USP13-201ENST00000263966 ANP32CO43423 234 aa22.67■■□□□ 1.22
USP13-201ENST00000263966 HSP90AA1P07900 732 aaKnown RBP22.67■■□□□ 1.22
USP13-201ENST00000263966 NPM2Q86SE8 214 aaKnown RBP22.63■■□□□ 1.21
USP13-201ENST00000263966 NEUROD1Q13562 356 aa22.62■■□□□ 1.21
USP13-201ENST00000263966 PLPPR3Q6T4P5 718 aa22.62■■□□□ 1.21
USP13-201ENST00000263966 NPM1P06748 294 aaKnown RBP eCLIP22.6■■□□□ 1.21
USP13-201ENST00000263966 SCAF1Q9H7N4 1312 aaKnown RBP22.55■■□□□ 1.2
USP13-201ENST00000263966 A0A0G2JS52 829 aa22.52■■□□□ 1.2
USP13-201ENST00000263966 UPF2Q9HAU5 1272 aaKnown RBP22.52■■□□□ 1.2
USP13-201ENST00000263966 HRCP23327 699 aa22.51■■□□□ 1.19
USP13-201ENST00000263966 ANP32AP39687 249 aaKnown RBP22.44■■□□□ 1.18
USP13-201ENST00000263966 DIEXFQ68CQ4 756 aaKnown RBP22.41■■□□□ 1.18
USP13-201ENST00000263966 CHGAP10645 457 aaKnown RBP22.38■■□□□ 1.17
USP13-201ENST00000263966 ZNF777Q9ULD5 760 aaPredicted RBP22.31■■□□□ 1.16
USP13-201ENST00000263966 HAP1P54257 671 aaPredicted RBP22.23■■□□□ 1.15
USP13-201ENST00000263966 MYH16Q9H6N6 1097 aa22.23■■□□□ 1.15
USP13-201ENST00000263966 C14orf37Q86TY3 774 aa22.21■■□□□ 1.15
USP13-201ENST00000263966 PABPN1Q86U42 306 aaKnown RBP eCLIP22.2■■□□□ 1.14
USP13-201ENST00000263966 ABCC9O60706 1549 aa22.18■■□□□ 1.14
USP13-201ENST00000263966 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.15■■□□□ 1.14
USP13-201ENST00000263966 GLIPR1L2Q4G1C9 344 aa22.13■■□□□ 1.13
USP13-201ENST00000263966 NPHP1O15259 732 aa22.11■■□□□ 1.13
USP13-201ENST00000263966 ARID3CA6NKF2 412 aa22.11■■□□□ 1.13
USP13-201ENST00000263966 LOC105371045A0A1W2PR82 267 aa22.06■■□□□ 1.12
USP13-201ENST00000263966 ZBTB7CA1YPR0 619 aa22.03■■□□□ 1.12
USP13-201ENST00000263966 ZRSR1Q15695 479 aaKnown RBP22.03■■□□□ 1.12
USP13-201ENST00000263966 PPP1R15AO75807 674 aaPredicted RBP22■■□□□ 1.11
USP13-201ENST00000263966 TULP1O00294 542 aaPredicted RBP21.99■■□□□ 1.11
USP13-201ENST00000263966 WDR43Q15061 677 aaKnown RBP eCLIP21.99■■□□□ 1.11
USP13-201ENST00000263966 NCLP19338 710 aaKnown RBP21.96■■□□□ 1.11
USP13-201ENST00000263966 ARXQ96QS3 562 aa21.96■■□□□ 1.11
USP13-201ENST00000263966 P3H3Q8IVL6 736 aa21.95■■□□□ 1.1
USP13-201ENST00000263966 TONSLQ96HA7 1378 aa21.92■■□□□ 1.1
USP13-201ENST00000263966 EIF5BO60841 1220 aaKnown RBP21.89■■□□□ 1.1
USP13-201ENST00000263966 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.89■■□□□ 1.19e-7■■■■□ 19.7
USP13-201ENST00000263966 ARID4BQ4LE39 1312 aaPredicted RBP21.89■■□□□ 1.09
USP13-201ENST00000263966 PLEKHG5O94827 1062 aa21.88■■□□□ 1.09
USP13-201ENST00000263966 CASC1Q6TDU7 716 aa21.84■■□□□ 1.09
USP13-201ENST00000263966 TMC1Q8TDI8 760 aa21.83■■□□□ 1.08
USP13-201ENST00000263966 GOLGA2Q08379 1002 aa21.82■■□□□ 1.08
USP13-201ENST00000263966 TSPY4P0CV99 314 aa21.78■■□□□ 1.08
USP13-201ENST00000263966 TSPY10P0CW01 314 aa21.78■■□□□ 1.08
USP13-201ENST00000263966 NCBP3Q53F19 620 aaKnown RBP21.76■■□□□ 1.07
USP13-201ENST00000263966 GOLGA6L22H0YM25 854 aa21.75■■□□□ 1.07
USP13-201ENST00000263966 TRIM44Q96DX7 344 aaPredicted RBP21.75■■□□□ 1.07
USP13-201ENST00000263966 EIF4G2P78344 907 aaKnown RBP eCLIP21.73■■□□□ 1.07
USP13-201ENST00000263966 ANP32EQ9BTT0 268 aa21.7■■□□□ 1.06
USP13-201ENST00000263966 CLSTN1O94985 981 aa21.69■■□□□ 1.06
USP13-201ENST00000263966 BECN1Q14457 450 aa21.69■■□□□ 1.06
USP13-201ENST00000263966 CHMP7Q8WUX9 453 aaPredicted RBP21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms