RNA–Protein interactions for RNA: ENST00000558970.2

GABPB1-208, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 5

Gene GABPB1, Length 730 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-208ENST00000558970 NISCHQ9Y2I1 1504 aa29.56■■■□□ 2.32
GABPB1-208ENST00000558970 CCDC180Q9P1Z9 1646 aa26.19■■□□□ 1.78
GABPB1-208ENST00000558970 ABCC9O60706 1549 aa25.37■■□□□ 1.65
GABPB1-208ENST00000558970 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.55
GABPB1-208ENST00000558970 DCAF8L2P0C7V8 631 aa24.7■■□□□ 1.54
GABPB1-208ENST00000558970 RB1CC1Q8TDY2 1594 aa24.48■■□□□ 1.51
GABPB1-208ENST00000558970 NACADO15069 1562 aa24.47■■□□□ 1.51
GABPB1-208ENST00000558970 DCAF1Q9Y4B6 1507 aa24.38■■□□□ 1.49
GABPB1-208ENST00000558970 MYO15BQ96JP2 1530 aa24.32■■□□□ 1.48
GABPB1-208ENST00000558970 UNC13AQ9UPW8 1703 aa24.1■■□□□ 1.45
GABPB1-208ENST00000558970 DNAJC5BQ9UF47 199 aa24.05■■□□□ 1.44
GABPB1-208ENST00000558970 SCRIBQ14160 1630 aa24.04■■□□□ 1.44
GABPB1-208ENST00000558970 SHROOM4Q9ULL8 1493 aa23.75■■□□□ 1.39
GABPB1-208ENST00000558970 BICRAQ9NZM4 1560 aa23.74■■□□□ 1.39
GABPB1-208ENST00000558970 PABPN1Q86U42 306 aaKnown RBP eCLIP23.74■■□□□ 1.39
GABPB1-208ENST00000558970 EIF4G1Q04637 1599 aaKnown RBP23.1■■□□□ 1.29
GABPB1-208ENST00000558970 CECR2Q9BXF3 1484 aa23.05■■□□□ 1.28
GABPB1-208ENST00000558970 CC2D2AQ9P2K1 1620 aa22.96■■□□□ 1.27
GABPB1-208ENST00000558970 SMARCA4P51532 1647 aa22.94■■□□□ 1.26
GABPB1-208ENST00000558970 BAZ1AQ9NRL2 1556 aaPredicted RBP22.91■■□□□ 1.26
GABPB1-208ENST00000558970 MROH2BQ7Z745 1585 aa22.84■■□□□ 1.25
GABPB1-208ENST00000558970 WIZO95785 1651 aa22.71■■□□□ 1.23
GABPB1-208ENST00000558970 ATAD2BQ9ULI0 1458 aa22.66■■□□□ 1.22
GABPB1-208ENST00000558970 SMARCA2P51531 1590 aa22.65■■□□□ 1.22
GABPB1-208ENST00000558970 RSF1Q96T23 1441 aaPredicted RBP22.64■■□□□ 1.21
GABPB1-208ENST00000558970 PEG3Q9GZU2 1588 aa22.61■■□□□ 1.21
GABPB1-208ENST00000558970 BAZ1BQ9UIG0 1483 aaKnown RBP22.54■■□□□ 1.2
GABPB1-208ENST00000558970 NCAPD3P42695 1498 aa22.53■■□□□ 1.2
GABPB1-208ENST00000558970 HMGXB3Q12766 1538 aa22.52■■□□□ 1.19
GABPB1-208ENST00000558970 SUPT5HO00267 1087 aaKnown RBP22.45■■□□□ 1.18
GABPB1-208ENST00000558970 TOP2AP11388 1531 aaKnown RBP22.38■■□□□ 1.17
GABPB1-208ENST00000558970 DNAJC5Q9H3Z4 198 aa22.37■■□□□ 1.17
GABPB1-208ENST00000558970 CCDC88BA6NC98 1476 aa22.11■■□□□ 1.13
GABPB1-208ENST00000558970 NESP48681 1621 aa22.06■■□□□ 1.12
GABPB1-208ENST00000558970 CUX2O14529 1486 aa22.01■■□□□ 1.11
GABPB1-208ENST00000558970 LAMC3Q9Y6N6 1575 aa21.97■■□□□ 1.11
GABPB1-208ENST00000558970 PRDM2Q13029 1718 aa21.92■■□□□ 1.1
GABPB1-208ENST00000558970 CADPSQ9ULU8 1353 aa21.91■■□□□ 1.1
GABPB1-208ENST00000558970 KIF21AQ7Z4S6 1674 aa21.89■■□□□ 1.1
GABPB1-208ENST00000558970 ERCC6Q03468 1493 aa21.87■■□□□ 1.09
GABPB1-208ENST00000558970 CFTRP13569 1480 aa21.86■■□□□ 1.09
GABPB1-208ENST00000558970 PDS5BQ9NTI5 1447 aa21.76■■□□□ 1.07
GABPB1-208ENST00000558970 FANCD2Q9BXW9 1451 aa21.74■■□□□ 1.07
GABPB1-208ENST00000558970 CEP164Q9UPV0 1460 aa21.69■■□□□ 1.06
GABPB1-208ENST00000558970 THOC2Q8NI27 1593 aaKnown RBP21.64■■□□□ 1.05
GABPB1-208ENST00000558970 MRC2Q9UBG0 1479 aa21.57■■□□□ 1.04
GABPB1-208ENST00000558970 ABCC8Q09428 1581 aa21.53■■□□□ 1.04
GABPB1-208ENST00000558970 URB2Q14146 1524 aaKnown RBP21.52■■□□□ 1.04
GABPB1-208ENST00000558970 WDR62O43379 1518 aa21.49■■□□□ 1.03
GABPB1-208ENST00000558970 DNMBPQ6XZF7 1577 aa21.44■■□□□ 1.02
GABPB1-208ENST00000558970 TOPBP1Q92547 1522 aa21.44■■□□□ 1.02
GABPB1-208ENST00000558970 CUX1P39880 1505 aa21.42■■□□□ 1.02
GABPB1-208ENST00000558970 SYNJ1O43426 1573 aa21.39■■□□□ 1.01
GABPB1-208ENST00000558970 WRNQ14191 1432 aaPredicted RBP eCLIP21.37■■□□□ 1.01
GABPB1-208ENST00000558970 BIVM-ERCC5R4GMW8 1640 aa21.33■■□□□ 1.01
GABPB1-208ENST00000558970 TOP2BQ02880 1626 aa21.31■■□□□ 1
GABPB1-208ENST00000558970 FGD5Q6ZNL6 1462 aa21.3■■□□□ 1
GABPB1-208ENST00000558970 POLA1P09884 1462 aaPredicted RBP21.26■□□□□ 0.99
GABPB1-208ENST00000558970 RAD54L2Q9Y4B4 1467 aa21.22■□□□□ 0.99
GABPB1-208ENST00000558970 TARBP1Q13395 1621 aaKnown RBP21.19■□□□□ 0.98
GABPB1-208ENST00000558970 WDR97A6NE52 1622 aa21.16■□□□□ 0.98
GABPB1-208ENST00000558970 IFT140Q96RY7 1462 aa21.16■□□□□ 0.98
GABPB1-208ENST00000558970 SOGA1O94964 1423 aa21.16■□□□□ 0.98
GABPB1-208ENST00000558970 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
GABPB1-208ENST00000558970 ZNF608Q9ULD9 1512 aaPredicted RBP21.12■□□□□ 0.97
GABPB1-208ENST00000558970 EIF4G3O43432 1585 aaKnown RBP21.1■□□□□ 0.97
GABPB1-208ENST00000558970 CHIC1Q5VXU3 224 aa21.04■□□□□ 0.96
GABPB1-208ENST00000558970 TDRD9Q8NDG6 1382 aaKnown RBP21.04■□□□□ 0.96
GABPB1-208ENST00000558970 AQRO60306 1485 aaKnown RBP eCLIP21.04■□□□□ 0.96
GABPB1-208ENST00000558970 ABCA10Q8WWZ4 1543 aa21.04■□□□□ 0.96
GABPB1-208ENST00000558970 PBRM1Q86U86 1689 aa21.02■□□□□ 0.96
GABPB1-208ENST00000558970 OSCARQ8IYS5 282 aa21■□□□□ 0.95
GABPB1-208ENST00000558970 ABCA5Q8WWZ7 1642 aa21■□□□□ 0.95
GABPB1-208ENST00000558970 GAPVD1Q14C86 1478 aa20.94■□□□□ 0.94
GABPB1-208ENST00000558970 RUSC2Q8N2Y8 1516 aa20.88■□□□□ 0.93
GABPB1-208ENST00000558970 GRIN2BQ13224 1484 aa20.87■□□□□ 0.93
GABPB1-208ENST00000558970 KIF27Q86VH2 1401 aa20.87■□□□□ 0.93
GABPB1-208ENST00000558970 SNAPC4Q5SXM2 1469 aa20.86■□□□□ 0.93
GABPB1-208ENST00000558970 CHD1O14646 1710 aa20.85■□□□□ 0.93
GABPB1-208ENST00000558970 ERICH3Q5RHP9 1530 aa20.8■□□□□ 0.92
GABPB1-208ENST00000558970 ADAMTS12P58397 1594 aa20.79■□□□□ 0.92
GABPB1-208ENST00000558970 FAM9AQ8IZU1 332 aaPredicted RBP20.78■□□□□ 0.92
GABPB1-208ENST00000558970 MAGI1Q96QZ7 1491 aaPredicted RBP20.77■□□□□ 0.92
GABPB1-208ENST00000558970 FBLN2P98095 1184 aa20.77■□□□□ 0.92
GABPB1-208ENST00000558970 CUL7Q14999 1698 aa20.75■□□□□ 0.91
GABPB1-208ENST00000558970 IGF1RP08069 1367 aa20.71■□□□□ 0.91
GABPB1-208ENST00000558970 SYNJ2O15056 1496 aa20.69■□□□□ 0.9
GABPB1-208ENST00000558970 CHMP7Q8WUX9 453 aaPredicted RBP20.67■□□□□ 0.9
GABPB1-208ENST00000558970 FHAD1B1AJZ9 1412 aa20.67■□□□□ 0.9
GABPB1-208ENST00000558970 GRIN2AQ12879 1464 aa20.63■□□□□ 0.89
GABPB1-208ENST00000558970 EEA1Q15075 1411 aa20.63■□□□□ 0.89
GABPB1-208ENST00000558970 CARMIL1Q5VZK9 1371 aa20.62■□□□□ 0.89
GABPB1-208ENST00000558970 EHMT2Q96KQ7 1210 aa20.6■□□□□ 0.89
GABPB1-208ENST00000558970 CSRNP3Q8WYN3 585 aa20.59■□□□□ 0.89
GABPB1-208ENST00000558970 CEP170Q5SW79 1584 aa20.57■□□□□ 0.88
GABPB1-208ENST00000558970 RIMBP3CA6NJZ7 1639 aa20.56■□□□□ 0.88
GABPB1-208ENST00000558970 RIMBP3BA6NNM3 1639 aa20.56■□□□□ 0.88
GABPB1-208ENST00000558970 RIMBP3Q9UFD9 1639 aa20.56■□□□□ 0.88
GABPB1-208ENST00000558970 RAPGEF2Q9Y4G8 1499 aa20.56■□□□□ 0.88
GABPB1-208ENST00000558970 ARHGEF11O15085 1522 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms