RNA–Protein interactions for RNA: ENST00000414664.5

CPNE1-207, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,070 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-207ENST00000414664 NISCHQ9Y2I1 1504 aa61.26■■■■■ 7.4
CPNE1-207ENST00000414664 CCDC180Q9P1Z9 1646 aa54.46■■■■■ 6.31
CPNE1-207ENST00000414664 ABCC9O60706 1549 aa53.27■■■■■ 6.12
CPNE1-207ENST00000414664 RB1CC1Q8TDY2 1594 aa51.29■■■■■ 5.8
CPNE1-207ENST00000414664 DCAF8L2P0C7V8 631 aa51.26■■■■■ 5.8
CPNE1-207ENST00000414664 NACADO15069 1562 aa51.23■■■■■ 5.79
CPNE1-207ENST00000414664 ZCCHC6Q5VYS8 1495 aaKnown RBP51.01■■■■■ 5.76
CPNE1-207ENST00000414664 MYO15BQ96JP2 1530 aa50.93■■■■■ 5.74
CPNE1-207ENST00000414664 DCAF1Q9Y4B6 1507 aa50.71■■■■■ 5.71
CPNE1-207ENST00000414664 UNC13AQ9UPW8 1703 aa50.03■■■■■ 5.6
CPNE1-207ENST00000414664 PABPN1Q86U42 306 aaKnown RBP eCLIP49.8■■■■■ 5.56
CPNE1-207ENST00000414664 SCRIBQ14160 1630 aa49.67■■■■■ 5.54
CPNE1-207ENST00000414664 BICRAQ9NZM4 1560 aa49.65■■■■■ 5.54
CPNE1-207ENST00000414664 SHROOM4Q9ULL8 1493 aa49.24■■■■■ 5.47
CPNE1-207ENST00000414664 DNAJC5BQ9UF47 199 aa48.86■■■■■ 5.41
CPNE1-207ENST00000414664 EIF4G1Q04637 1599 aaKnown RBP48.39■■■■■ 5.34
CPNE1-207ENST00000414664 CC2D2AQ9P2K1 1620 aa48.18■■■■■ 5.3
CPNE1-207ENST00000414664 CECR2Q9BXF3 1484 aa47.89■■■■■ 5.26
CPNE1-207ENST00000414664 SMARCA4P51532 1647 aa47.51■■■■■ 5.2
CPNE1-207ENST00000414664 BAZ1AQ9NRL2 1556 aaPredicted RBP47.5■■■■■ 5.19
CPNE1-207ENST00000414664 ATAD2BQ9ULI0 1458 aa47.27■■■■■ 5.16
CPNE1-207ENST00000414664 NCAPD3P42695 1498 aa47.27■■■■■ 5.16
CPNE1-207ENST00000414664 SMARCA2P51531 1590 aa47.25■■■■■ 5.15
CPNE1-207ENST00000414664 MROH2BQ7Z745 1585 aa47.18■■■■■ 5.14
CPNE1-207ENST00000414664 PEG3Q9GZU2 1588 aa47.06■■■■■ 5.12
CPNE1-207ENST00000414664 HMGXB3Q12766 1538 aa47.02■■■■■ 5.12
CPNE1-207ENST00000414664 BAZ1BQ9UIG0 1483 aaKnown RBP46.91■■■■■ 5.1
CPNE1-207ENST00000414664 RSF1Q96T23 1441 aaPredicted RBP46.67■■■■■ 5.06
CPNE1-207ENST00000414664 WIZO95785 1651 aa46.66■■■■■ 5.06
CPNE1-207ENST00000414664 TOP2AP11388 1531 aaKnown RBP46.2■■■■■ 4.99
CPNE1-207ENST00000414664 NESP48681 1621 aa46.06■■■■■ 4.96
CPNE1-207ENST00000414664 LAMC3Q9Y6N6 1575 aa46.02■■■■■ 4.96
CPNE1-207ENST00000414664 ERCC6Q03468 1493 aa45.97■■■■■ 4.95
CPNE1-207ENST00000414664 CADPSQ9ULU8 1353 aa45.91■■■■■ 4.94
CPNE1-207ENST00000414664 PDS5BQ9NTI5 1447 aa45.76■■■■■ 4.92
CPNE1-207ENST00000414664 CCDC88BA6NC98 1476 aa45.67■■■■■ 4.9
CPNE1-207ENST00000414664 CFTRP13569 1480 aa45.61■■■■■ 4.89
CPNE1-207ENST00000414664 SUPT5HO00267 1087 aaKnown RBP45.55■■■■■ 4.88
CPNE1-207ENST00000414664 KIF21AQ7Z4S6 1674 aa45.52■■■■■ 4.88
CPNE1-207ENST00000414664 CUX2O14529 1486 aa45.47■■■■■ 4.87
CPNE1-207ENST00000414664 THOC2Q8NI27 1593 aaKnown RBP45.36■■■■■ 4.85
CPNE1-207ENST00000414664 FANCD2Q9BXW9 1451 aa45.36■■■■■ 4.85
CPNE1-207ENST00000414664 CEP164Q9UPV0 1460 aa45.31■■■■■ 4.84
CPNE1-207ENST00000414664 PRDM2Q13029 1718 aa45.23■■■■■ 4.83
CPNE1-207ENST00000414664 MRC2Q9UBG0 1479 aa45.23■■■■■ 4.83
CPNE1-207ENST00000414664 WDR62O43379 1518 aa45.06■■■■■ 4.8
CPNE1-207ENST00000414664 URB2Q14146 1524 aaKnown RBP44.86■■■■■ 4.77
CPNE1-207ENST00000414664 ABCC8Q09428 1581 aa44.7■■■■■ 4.75
CPNE1-207ENST00000414664 TOPBP1Q92547 1522 aa44.62■■■■■ 4.73
CPNE1-207ENST00000414664 DNMBPQ6XZF7 1577 aa44.57■■■■■ 4.73
CPNE1-207ENST00000414664 IFT140Q96RY7 1462 aa44.38■■■■■ 4.69
CPNE1-207ENST00000414664 CUX1P39880 1505 aa44.26■■■■■ 4.68
CPNE1-207ENST00000414664 POLA1P09884 1462 aaPredicted RBP44.23■■■■■ 4.67
CPNE1-207ENST00000414664 FGD5Q6ZNL6 1462 aa44.14■■■■■ 4.66
CPNE1-207ENST00000414664 ZNF608Q9ULD9 1512 aaPredicted RBP44.11■■■■■ 4.65
CPNE1-207ENST00000414664 SOGA1O94964 1423 aa44.11■■■■■ 4.65
CPNE1-207ENST00000414664 TARBP1Q13395 1621 aaKnown RBP44.1■■■■■ 4.65
CPNE1-207ENST00000414664 DNAJC5Q9H3Z4 198 aa44.09■■■■■ 4.65
CPNE1-207ENST00000414664 WRNQ14191 1432 aaPredicted RBP eCLIP44.04■■■■■ 4.64
CPNE1-207ENST00000414664 RAD54L2Q9Y4B4 1467 aa44.03■■■■■ 4.64
CPNE1-207ENST00000414664 EIF4G3O43432 1585 aaKnown RBP43.94■■■■■ 4.62
CPNE1-207ENST00000414664 TOP2BQ02880 1626 aa43.91■■■■■ 4.62
CPNE1-207ENST00000414664 BIVM-ERCC5R4GMW8 1640 aa43.89■■■■■ 4.62
CPNE1-207ENST00000414664 AQRO60306 1485 aaKnown RBP eCLIP43.89■■■■■ 4.623e-7■■■■□ 25.1
CPNE1-207ENST00000414664 SYNJ1O43426 1573 aa43.85■■■■■ 4.61
CPNE1-207ENST00000414664 TDRD9Q8NDG6 1382 aaKnown RBP43.83■■■■■ 4.61
CPNE1-207ENST00000414664 WDR97A6NE52 1622 aa43.83■■■■■ 4.61
CPNE1-207ENST00000414664 ABCA10Q8WWZ4 1543 aa43.73■■■■■ 4.59
CPNE1-207ENST00000414664 OSCARQ8IYS5 282 aa43.65■■■■■ 4.58
CPNE1-207ENST00000414664 GRIN2BQ13224 1484 aa43.58■■■■■ 4.57
CPNE1-207ENST00000414664 GAPVD1Q14C86 1478 aa43.58■■■■■ 4.57
CPNE1-207ENST00000414664 ABCA5Q8WWZ7 1642 aa43.51■■■■■ 4.56
CPNE1-207ENST00000414664 SNAPC4Q5SXM2 1469 aa43.49■■■■■ 4.55
CPNE1-207ENST00000414664 MAGI1Q96QZ7 1491 aaPredicted RBP43.47■■■■■ 4.55
CPNE1-207ENST00000414664 PBRM1Q86U86 1689 aa43.44■■■■■ 4.54
CPNE1-207ENST00000414664 FBLN2P98095 1184 aa43.44■■■■■ 4.54
CPNE1-207ENST00000414664 CHD1O14646 1710 aa43.38■■■■■ 4.53
CPNE1-207ENST00000414664 CHMP7Q8WUX9 453 aaPredicted RBP43.34■■■■■ 4.53
CPNE1-207ENST00000414664 SYNJ2O15056 1496 aa43.29■■■■■ 4.52
CPNE1-207ENST00000414664 ERICH3Q5RHP9 1530 aa43.22■■■■■ 4.51
CPNE1-207ENST00000414664 KIF27Q86VH2 1401 aa43.14■■■■■ 4.5
CPNE1-207ENST00000414664 FHAD1B1AJZ9 1412 aa43.1■■■■■ 4.49
CPNE1-207ENST00000414664 ADAMTS12P58397 1594 aa43.1■■■■■ 4.49
CPNE1-207ENST00000414664 TRIM41Q8WV44 630 aa43.06■■■■■ 4.48
CPNE1-207ENST00000414664 GRIN2AQ12879 1464 aa43■■■■■ 4.47
CPNE1-207ENST00000414664 IGF1RP08069 1367 aa42.94■■■■■ 4.46
CPNE1-207ENST00000414664 CLASP1Q7Z460 1538 aa42.92■■■■■ 4.46
CPNE1-207ENST00000414664 RIMBP3CA6NJZ7 1639 aa42.84■■■■■ 4.45
CPNE1-207ENST00000414664 RIMBP3BA6NNM3 1639 aa42.84■■■■■ 4.45
CPNE1-207ENST00000414664 ARHGEF11O15085 1522 aa42.84■■■■■ 4.45
CPNE1-207ENST00000414664 RIMBP3Q9UFD9 1639 aa42.84■■■■■ 4.45
CPNE1-207ENST00000414664 CUL7Q14999 1698 aa42.82■■■■■ 4.44
CPNE1-207ENST00000414664 NUP160Q12769 1436 aa42.8■■■■■ 4.44
CPNE1-207ENST00000414664 CEP170Q5SW79 1584 aa42.74■■■■■ 4.43
CPNE1-207ENST00000414664 CARMIL1Q5VZK9 1371 aa42.71■■■■■ 4.43
CPNE1-207ENST00000414664 RUSC2Q8N2Y8 1516 aa42.66■■■■■ 4.42
CPNE1-207ENST00000414664 CYB5RLQ6IPT4 315 aa42.51■■■■■ 4.4
CPNE1-207ENST00000414664 CHIC1Q5VXU3 224 aa42.49■■■■■ 4.39
CPNE1-207ENST00000414664 ARAP1Q96P48 1450 aa42.49■■■■■ 4.39
CPNE1-207ENST00000414664 RAPGEF2Q9Y4G8 1499 aa42.45■■■■■ 4.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms