RNA–Protein interactions for RNA: ENST00000396076.5

LDHB-203, Transcript of lactate dehydrogenase B, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LDHB, Length 1,538 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHB-203ENST00000396076 NISCHQ9Y2I1 1504 aa54.15■■■■■ 6.26
LDHB-203ENST00000396076 CCDC180Q9P1Z9 1646 aa47.39■■■■■ 5.18
LDHB-203ENST00000396076 ZCCHC6Q5VYS8 1495 aaKnown RBP45.38■■■■■ 4.85
LDHB-203ENST00000396076 ABCC9O60706 1549 aa45.27■■■■■ 4.84
LDHB-203ENST00000396076 DCAF8L2P0C7V8 631 aa44.88■■■■■ 4.78
LDHB-203ENST00000396076 DCAF1Q9Y4B6 1507 aa44.8■■■■■ 4.76
LDHB-203ENST00000396076 MYO15BQ96JP2 1530 aa44.46■■■■■ 4.71
LDHB-203ENST00000396076 NACADO15069 1562 aa44.3■■■■■ 4.68
LDHB-203ENST00000396076 RB1CC1Q8TDY2 1594 aa44.02■■■■■ 4.64
LDHB-203ENST00000396076 SHROOM4Q9ULL8 1493 aa43.78■■■■■ 4.6
LDHB-203ENST00000396076 SCRIBQ14160 1630 aa43.49■■■■■ 4.55
LDHB-203ENST00000396076 UNC13AQ9UPW8 1703 aa42.99■■■■■ 4.47
LDHB-203ENST00000396076 BICRAQ9NZM4 1560 aa42.69■■■■■ 4.42
LDHB-203ENST00000396076 PABPN1Q86U42 306 aaKnown RBP eCLIP42.63■■■■■ 4.42
LDHB-203ENST00000396076 CECR2Q9BXF3 1484 aa42.1■■■■■ 4.33
LDHB-203ENST00000396076 SUPT5HO00267 1087 aaKnown RBP41.92■■■■■ 4.3
LDHB-203ENST00000396076 RSF1Q96T23 1441 aaPredicted RBP41.84■■■■■ 4.29
LDHB-203ENST00000396076 BAZ1AQ9NRL2 1556 aaPredicted RBP41.83■■■■■ 4.29
LDHB-203ENST00000396076 MROH2BQ7Z745 1585 aa41.79■■■■■ 4.28
LDHB-203ENST00000396076 SMARCA4P51532 1647 aa41.68■■■■■ 4.26
LDHB-203ENST00000396076 EIF4G1Q04637 1599 aaKnown RBP41.44■■■■■ 4.22
LDHB-203ENST00000396076 WIZO95785 1651 aa41.37■■■■■ 4.21
LDHB-203ENST00000396076 PEG3Q9GZU2 1588 aa41.23■■■■■ 4.19
LDHB-203ENST00000396076 ATAD2BQ9ULI0 1458 aa41.17■■■■■ 4.18
LDHB-203ENST00000396076 SMARCA2P51531 1590 aa41.12■■■■■ 4.17
LDHB-203ENST00000396076 TOP2AP11388 1531 aaKnown RBP40.99■■■■■ 4.15
LDHB-203ENST00000396076 NCAPD3P42695 1498 aa40.93■■■■■ 4.14
LDHB-203ENST00000396076 CC2D2AQ9P2K1 1620 aa40.93■■■■■ 4.14
LDHB-203ENST00000396076 BAZ1BQ9UIG0 1483 aaKnown RBP40.89■■■■■ 4.14
LDHB-203ENST00000396076 HMGXB3Q12766 1538 aa40.79■■■■■ 4.12
LDHB-203ENST00000396076 CCDC88BA6NC98 1476 aa40.59■■■■■ 4.09
LDHB-203ENST00000396076 DNAJC5BQ9UF47 199 aa40.42■■■■■ 4.06
LDHB-203ENST00000396076 CHIC1Q5VXU3 224 aa39.91■■■■□ 3.98
LDHB-203ENST00000396076 CFTRP13569 1480 aa39.87■■■■□ 3.97
LDHB-203ENST00000396076 CADPSQ9ULU8 1353 aa39.85■■■■□ 3.97
LDHB-203ENST00000396076 NESP48681 1621 aa39.58■■■■□ 3.93
LDHB-203ENST00000396076 LAMC3Q9Y6N6 1575 aa39.57■■■■□ 3.92
LDHB-203ENST00000396076 ABCC8Q09428 1581 aa39.51■■■■□ 3.91
LDHB-203ENST00000396076 TRIM41Q8WV44 630 aa39.5■■■■□ 3.91
LDHB-203ENST00000396076 PRDM2Q13029 1718 aa39.49■■■■□ 3.91
LDHB-203ENST00000396076 WRNQ14191 1432 aaPredicted RBP eCLIP39.39■■■■□ 3.9
LDHB-203ENST00000396076 FANCD2Q9BXW9 1451 aa39.37■■■■□ 3.89
LDHB-203ENST00000396076 PDS5BQ9NTI5 1447 aa39.33■■■■□ 3.89
LDHB-203ENST00000396076 SYNJ1O43426 1573 aa39.18■■■■□ 3.86
LDHB-203ENST00000396076 CEP164Q9UPV0 1460 aa39.16■■■■□ 3.86
LDHB-203ENST00000396076 CUX1P39880 1505 aa39.11■■■■□ 3.85
LDHB-203ENST00000396076 TOP2BQ02880 1626 aa39.08■■■■□ 3.85
LDHB-203ENST00000396076 KIF21AQ7Z4S6 1674 aa39.03■■■■□ 3.84
LDHB-203ENST00000396076 BIVM-ERCC5R4GMW8 1640 aa39.02■■■■□ 3.84
LDHB-203ENST00000396076 DNMBPQ6XZF7 1577 aa38.9■■■■□ 3.82
LDHB-203ENST00000396076 URB2Q14146 1524 aaKnown RBP38.89■■■■□ 3.82
LDHB-203ENST00000396076 TOPBP1Q92547 1522 aa38.88■■■■□ 3.81
LDHB-203ENST00000396076 ERCC6Q03468 1493 aa38.87■■■■□ 3.81
LDHB-203ENST00000396076 MRC2Q9UBG0 1479 aa38.82■■■■□ 3.8
LDHB-203ENST00000396076 FGD5Q6ZNL6 1462 aa38.76■■■■□ 3.8
LDHB-203ENST00000396076 SOGA1O94964 1423 aa38.73■■■■□ 3.79
LDHB-203ENST00000396076 FAM9AQ8IZU1 332 aaPredicted RBP38.71■■■■□ 3.79
LDHB-203ENST00000396076 POLA1P09884 1462 aaPredicted RBP38.66■■■■□ 3.78
LDHB-203ENST00000396076 WDR62O43379 1518 aa38.61■■■■□ 3.77
LDHB-203ENST00000396076 RUSC2Q8N2Y8 1516 aa38.59■■■■□ 3.77
LDHB-203ENST00000396076 EEA1Q15075 1411 aa38.58■■■■□ 3.77
LDHB-203ENST00000396076 THOC2Q8NI27 1593 aaKnown RBP38.56■■■■□ 3.76
LDHB-203ENST00000396076 RAD54L2Q9Y4B4 1467 aa38.52■■■■□ 3.76
LDHB-203ENST00000396076 CSRNP3Q8WYN3 585 aa38.45■■■■□ 3.75
LDHB-203ENST00000396076 KIF27Q86VH2 1401 aa38.45■■■■□ 3.75
LDHB-203ENST00000396076 CUX2O14529 1486 aa38.43■■■■□ 3.74
LDHB-203ENST00000396076 ABCA10Q8WWZ4 1543 aa38.43■■■■□ 3.74
LDHB-203ENST00000396076 LOC105371045A0A1W2PR82 267 aa38.34■■■■□ 3.73
LDHB-203ENST00000396076 TARBP1Q13395 1621 aaKnown RBP38.31■■■■□ 3.72
LDHB-203ENST00000396076 IFT140Q96RY7 1462 aa38.28■■■■□ 3.72
LDHB-203ENST00000396076 WDR97A6NE52 1622 aa38.26■■■■□ 3.71
LDHB-203ENST00000396076 TDRD9Q8NDG6 1382 aaKnown RBP38.21■■■■□ 3.71
LDHB-203ENST00000396076 IGF1RP08069 1367 aa38.18■■■■□ 3.7
LDHB-203ENST00000396076 EHMT2Q96KQ7 1210 aa38.13■■■■□ 3.69
LDHB-203ENST00000396076 GAPVD1Q14C86 1478 aa38.11■■■■□ 3.69
LDHB-203ENST00000396076 ABCA5Q8WWZ7 1642 aa38.1■■■■□ 3.69
LDHB-203ENST00000396076 PRXQ9BXM0 1461 aa38.06■■■■□ 3.68
LDHB-203ENST00000396076 ZNF608Q9ULD9 1512 aaPredicted RBP38.05■■■■□ 3.68
LDHB-203ENST00000396076 KIF21BO75037 1637 aa38.05■■■■□ 3.68
LDHB-203ENST00000396076 AQRO60306 1485 aaKnown RBP eCLIP38.04■■■■□ 3.682e-6■■■□□ 15.2
LDHB-203ENST00000396076 GOLGA3Q08378 1498 aa38■■■■□ 3.67
LDHB-203ENST00000396076 CARMIL1Q5VZK9 1371 aa37.97■■■■□ 3.67
LDHB-203ENST00000396076 ERICH3Q5RHP9 1530 aa37.97■■■■□ 3.67
LDHB-203ENST00000396076 RAPGEF2Q9Y4G8 1499 aa37.95■■■■□ 3.67
LDHB-203ENST00000396076 GRIN2BQ13224 1484 aa37.89■■■■□ 3.66
LDHB-203ENST00000396076 UBTFP17480 764 aaKnown RBP37.88■■■■□ 3.65
LDHB-203ENST00000396076 EIF4G3O43432 1585 aaKnown RBP37.87■■■■□ 3.65
LDHB-203ENST00000396076 CUL7Q14999 1698 aa37.83■■■■□ 3.65
LDHB-203ENST00000396076 TNIKQ9UKE5 1360 aa37.83■■■■□ 3.65
LDHB-203ENST00000396076 PBRM1Q86U86 1689 aa37.82■■■■□ 3.64
LDHB-203ENST00000396076 FHAD1B1AJZ9 1412 aa37.71■■■■□ 3.63
LDHB-203ENST00000396076 SNAPC4Q5SXM2 1469 aa37.67■■■■□ 3.62
LDHB-203ENST00000396076 ADAMTS12P58397 1594 aa37.64■■■■□ 3.62
LDHB-203ENST00000396076 MAGI1Q96QZ7 1491 aaPredicted RBP37.62■■■■□ 3.61
LDHB-203ENST00000396076 CEP162Q5TB80 1403 aa37.55■■■■□ 3.6
LDHB-203ENST00000396076 SYNJ2O15056 1496 aa37.48■■■■□ 3.59
LDHB-203ENST00000396076 CHMP7Q8WUX9 453 aaPredicted RBP37.45■■■■□ 3.59
LDHB-203ENST00000396076 GRIN2AQ12879 1464 aa37.41■■■■□ 3.58
LDHB-203ENST00000396076 CLIP1P30622 1438 aa37.39■■■■□ 3.58
LDHB-203ENST00000396076 FBLN2P98095 1184 aa37.37■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms