RNA–Protein interactions for RNA: ENST00000416778.5

CPNE1-210, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-210ENST00000416778 NISCHQ9Y2I1 1504 aa44.18■■■■■ 4.66
CPNE1-210ENST00000416778 CCDC180Q9P1Z9 1646 aa39.31■■■■□ 3.88
CPNE1-210ENST00000416778 ABCC9O60706 1549 aa39.15■■■■□ 3.86
CPNE1-210ENST00000416778 RB1CC1Q8TDY2 1594 aa37.34■■■■□ 3.57
CPNE1-210ENST00000416778 DCAF8L2P0C7V8 631 aa37.3■■■■□ 3.56
CPNE1-210ENST00000416778 NACADO15069 1562 aa37.21■■■■□ 3.55
CPNE1-210ENST00000416778 MYO15BQ96JP2 1530 aa36.84■■■■□ 3.49
CPNE1-210ENST00000416778 PABPN1Q86U42 306 aaKnown RBP eCLIP36.65■■■■□ 3.46
CPNE1-210ENST00000416778 DNAJC5BQ9UF47 199 aa36.65■■■■□ 3.46
CPNE1-210ENST00000416778 ZCCHC6Q5VYS8 1495 aaKnown RBP36.62■■■■□ 3.45
CPNE1-210ENST00000416778 DCAF1Q9Y4B6 1507 aa36.49■■■■□ 3.43
CPNE1-210ENST00000416778 UNC13AQ9UPW8 1703 aa36.39■■■■□ 3.42
CPNE1-210ENST00000416778 BICRAQ9NZM4 1560 aa36.29■■■■□ 3.4
CPNE1-210ENST00000416778 SCRIBQ14160 1630 aa35.89■■■■□ 3.34
CPNE1-210ENST00000416778 SHROOM4Q9ULL8 1493 aa35.78■■■■□ 3.32
CPNE1-210ENST00000416778 EIF4G1Q04637 1599 aaKnown RBP35.34■■■■□ 3.25
CPNE1-210ENST00000416778 CC2D2AQ9P2K1 1620 aa35.33■■■■□ 3.25
CPNE1-210ENST00000416778 CECR2Q9BXF3 1484 aa35.24■■■■□ 3.23
CPNE1-210ENST00000416778 NCAPD3P42695 1498 aa34.46■■■■□ 3.11
CPNE1-210ENST00000416778 ATAD2BQ9ULI0 1458 aa34.36■■■■□ 3.09
CPNE1-210ENST00000416778 SMARCA4P51532 1647 aa34.3■■■■□ 3.08
CPNE1-210ENST00000416778 BAZ1AQ9NRL2 1556 aaPredicted RBP34.2■■■■□ 3.07
CPNE1-210ENST00000416778 SMARCA2P51531 1590 aa34.19■■■■□ 3.06
CPNE1-210ENST00000416778 HMGXB3Q12766 1538 aa34.08■■■■□ 3.05
CPNE1-210ENST00000416778 MROH2BQ7Z745 1585 aa34.05■■■■□ 3.04
CPNE1-210ENST00000416778 PEG3Q9GZU2 1588 aa34■■■■□ 3.03
CPNE1-210ENST00000416778 BAZ1BQ9UIG0 1483 aaKnown RBP33.97■■■■□ 3.03
CPNE1-210ENST00000416778 NESP48681 1621 aa33.75■■■□□ 2.99
CPNE1-210ENST00000416778 ERCC6Q03468 1493 aa33.74■■■□□ 2.99
CPNE1-210ENST00000416778 WIZO95785 1651 aa33.58■■■□□ 2.97
CPNE1-210ENST00000416778 CUX2O14529 1486 aa33.57■■■□□ 2.97
CPNE1-210ENST00000416778 RSF1Q96T23 1441 aaPredicted RBP33.53■■■□□ 2.96
CPNE1-210ENST00000416778 LAMC3Q9Y6N6 1575 aa33.48■■■□□ 2.95
CPNE1-210ENST00000416778 CADPSQ9ULU8 1353 aa33.44■■■□□ 2.94
CPNE1-210ENST00000416778 PDS5BQ9NTI5 1447 aa33.38■■■□□ 2.93
CPNE1-210ENST00000416778 DNAJC5Q9H3Z4 198 aa33.38■■■□□ 2.93
CPNE1-210ENST00000416778 THOC2Q8NI27 1593 aaKnown RBP33.2■■■□□ 2.91
CPNE1-210ENST00000416778 TOP2AP11388 1531 aaKnown RBP33.18■■■□□ 2.9
CPNE1-210ENST00000416778 KIF21AQ7Z4S6 1674 aa33.16■■■□□ 2.9
CPNE1-210ENST00000416778 CFTRP13569 1480 aa33.08■■■□□ 2.89
CPNE1-210ENST00000416778 MRC2Q9UBG0 1479 aa33■■■□□ 2.87
CPNE1-210ENST00000416778 FANCD2Q9BXW9 1451 aa32.97■■■□□ 2.87
CPNE1-210ENST00000416778 CCDC88BA6NC98 1476 aa32.93■■■□□ 2.86
CPNE1-210ENST00000416778 CEP164Q9UPV0 1460 aa32.93■■■□□ 2.86
CPNE1-210ENST00000416778 WDR62O43379 1518 aa32.88■■■□□ 2.85
CPNE1-210ENST00000416778 URB2Q14146 1524 aaKnown RBP32.68■■■□□ 2.82
CPNE1-210ENST00000416778 PRDM2Q13029 1718 aa32.5■■■□□ 2.79
CPNE1-210ENST00000416778 TOPBP1Q92547 1522 aa32.37■■■□□ 2.77
CPNE1-210ENST00000416778 SUPT5HO00267 1087 aaKnown RBP32.36■■■□□ 2.77
CPNE1-210ENST00000416778 ABCC8Q09428 1581 aa32.35■■■□□ 2.77
CPNE1-210ENST00000416778 IFT140Q96RY7 1462 aa32.3■■■□□ 2.76
CPNE1-210ENST00000416778 OSCARQ8IYS5 282 aa32.28■■■□□ 2.76
CPNE1-210ENST00000416778 ZNF608Q9ULD9 1512 aaPredicted RBP32.25■■■□□ 2.75
CPNE1-210ENST00000416778 DNMBPQ6XZF7 1577 aa32.23■■■□□ 2.75
CPNE1-210ENST00000416778 POLA1P09884 1462 aaPredicted RBP32.07■■■□□ 2.72
CPNE1-210ENST00000416778 AQRO60306 1485 aaKnown RBP eCLIP32.04■■■□□ 2.723e-7■■■■□ 25.1
CPNE1-210ENST00000416778 TARBP1Q13395 1621 aaKnown RBP32.03■■■□□ 2.72
CPNE1-210ENST00000416778 SOGA1O94964 1423 aa32.02■■■□□ 2.72
CPNE1-210ENST00000416778 RAD54L2Q9Y4B4 1467 aa32■■■□□ 2.71
CPNE1-210ENST00000416778 TRIM41Q8WV44 630 aa31.97■■■□□ 2.71
CPNE1-210ENST00000416778 CUX1P39880 1505 aa31.94■■■□□ 2.7
CPNE1-210ENST00000416778 EIF4G3O43432 1585 aaKnown RBP31.93■■■□□ 2.7
CPNE1-210ENST00000416778 TDRD9Q8NDG6 1382 aaKnown RBP31.93■■■□□ 2.7
CPNE1-210ENST00000416778 FGD5Q6ZNL6 1462 aa31.91■■■□□ 2.7
CPNE1-210ENST00000416778 FBLN2P98095 1184 aa31.8■■■□□ 2.68
CPNE1-210ENST00000416778 WDR97A6NE52 1622 aa31.66■■■□□ 2.66
CPNE1-210ENST00000416778 CHMP7Q8WUX9 453 aaPredicted RBP31.63■■■□□ 2.65
CPNE1-210ENST00000416778 GRIN2BQ13224 1484 aa31.63■■■□□ 2.65
CPNE1-210ENST00000416778 SNAPC4Q5SXM2 1469 aa31.62■■■□□ 2.65
CPNE1-210ENST00000416778 CHD1O14646 1710 aa31.61■■■□□ 2.65
CPNE1-210ENST00000416778 RIMBP3CA6NJZ7 1639 aa31.6■■■□□ 2.65
CPNE1-210ENST00000416778 RIMBP3BA6NNM3 1639 aa31.6■■■□□ 2.65
CPNE1-210ENST00000416778 RIMBP3Q9UFD9 1639 aa31.6■■■□□ 2.65
CPNE1-210ENST00000416778 ABCA10Q8WWZ4 1543 aa31.59■■■□□ 2.65
CPNE1-210ENST00000416778 GAPVD1Q14C86 1478 aa31.58■■■□□ 2.65
CPNE1-210ENST00000416778 ARHGEF11O15085 1522 aa31.57■■■□□ 2.64
CPNE1-210ENST00000416778 WRNQ14191 1432 aaPredicted RBP eCLIP31.57■■■□□ 2.64
CPNE1-210ENST00000416778 MAGI1Q96QZ7 1491 aaPredicted RBP31.56■■■□□ 2.64
CPNE1-210ENST00000416778 CYB5RLQ6IPT4 315 aa31.5■■■□□ 2.63
CPNE1-210ENST00000416778 TOP2BQ02880 1626 aa31.48■■■□□ 2.63
CPNE1-210ENST00000416778 SYNJ2O15056 1496 aa31.47■■■□□ 2.63
CPNE1-210ENST00000416778 SYNJ1O43426 1573 aa31.45■■■□□ 2.63
CPNE1-210ENST00000416778 BIVM-ERCC5R4GMW8 1640 aa31.42■■■□□ 2.62
CPNE1-210ENST00000416778 ABCA5Q8WWZ7 1642 aa31.41■■■□□ 2.62
CPNE1-210ENST00000416778 CLASP1Q7Z460 1538 aa31.34■■■□□ 2.61
CPNE1-210ENST00000416778 PBRM1Q86U86 1689 aa31.34■■■□□ 2.61
CPNE1-210ENST00000416778 ARAP1Q96P48 1450 aa31.3■■■□□ 2.6
CPNE1-210ENST00000416778 FHAD1B1AJZ9 1412 aa31.2■■■□□ 2.59
CPNE1-210ENST00000416778 GRIN2AQ12879 1464 aa31.2■■■□□ 2.58
CPNE1-210ENST00000416778 ERICH3Q5RHP9 1530 aa31.16■■■□□ 2.58
CPNE1-210ENST00000416778 ADAMTS12P58397 1594 aa31.13■■■□□ 2.57
CPNE1-210ENST00000416778 NUP160Q12769 1436 aa31.11■■■□□ 2.57
CPNE1-210ENST00000416778 CEP170Q5SW79 1584 aa31.03■■■□□ 2.56
CPNE1-210ENST00000416778 IGF1RP08069 1367 aa31.03■■■□□ 2.56
CPNE1-210ENST00000416778 TRHP20396 242 aaPredicted RBP30.99■■■□□ 2.55
CPNE1-210ENST00000416778 KIF27Q86VH2 1401 aa30.96■■■□□ 2.55
CPNE1-210ENST00000416778 JPH4Q96JJ6 628 aa30.95■■■□□ 2.55
CPNE1-210ENST00000416778 ERCC6L2Q5T890 1561 aa30.92■■■□□ 2.54
CPNE1-210ENST00000416778 SHROOM2Q13796 1616 aa30.84■■■□□ 2.53
CPNE1-210ENST00000416778 PRG4Q92954 1404 aaPredicted RBP30.82■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms