RNA–Protein interactions for RNA: ENST00000380877.7

GABPB1-203, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABPB1, Length 4,816 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-203ENST00000380877 NISCHQ9Y2I1 1504 aa22.84■■□□□ 1.25
GABPB1-203ENST00000380877 DCAF8L2P0C7V8 631 aa22.03■■□□□ 1.12
GABPB1-203ENST00000380877 SHROOM4Q9ULL8 1493 aa20.94■□□□□ 0.94
GABPB1-203ENST00000380877 SUPT5HO00267 1087 aaKnown RBP20.94■□□□□ 0.94
GABPB1-203ENST00000380877 EHMT2Q96KQ7 1210 aa19.83■□□□□ 0.77
GABPB1-203ENST00000380877 FAM9AQ8IZU1 332 aaPredicted RBP19.62■□□□□ 0.73
GABPB1-203ENST00000380877 TRIM41Q8WV44 630 aa19.47■□□□□ 0.71
GABPB1-203ENST00000380877 ABCC9O60706 1549 aa19.41■□□□□ 0.7
GABPB1-203ENST00000380877 APLP2Q06481 763 aa19.3■□□□□ 0.68
GABPB1-203ENST00000380877 PCGF6Q9BYE7 350 aa19.13■□□□□ 0.65
GABPB1-203ENST00000380877 TTBK1Q5TCY1 1321 aaPredicted RBP19.1■□□□□ 0.65
GABPB1-203ENST00000380877 RANGAP1P46060 587 aaPredicted RBP19.08■□□□□ 0.64
GABPB1-203ENST00000380877 CHIC1Q5VXU3 224 aa19.06■□□□□ 0.64
GABPB1-203ENST00000380877 UBTFP17480 764 aaKnown RBP19.04■□□□□ 0.64
GABPB1-203ENST00000380877 PABPN1Q86U42 306 aaKnown RBP eCLIP19.02■□□□□ 0.64
GABPB1-203ENST00000380877 ZCCHC6Q5VYS8 1495 aaKnown RBP18.99■□□□□ 0.63
GABPB1-203ENST00000380877 CCDC180Q9P1Z9 1646 aa18.98■□□□□ 0.63
GABPB1-203ENST00000380877 LOC105371045A0A1W2PR82 267 aa18.81■□□□□ 0.6
GABPB1-203ENST00000380877 ATP1B4Q9UN42 357 aaPredicted RBP18.79■□□□□ 0.6
GABPB1-203ENST00000380877 PPARGC1BQ86YN6 1023 aaKnown RBP18.68■□□□□ 0.58
GABPB1-203ENST00000380877 SCRIBQ14160 1630 aa18.66■□□□□ 0.58
GABPB1-203ENST00000380877 CCER1Q8TC90 406 aaPredicted RBP18.65■□□□□ 0.58
GABPB1-203ENST00000380877 ZEB1P37275 1124 aaPredicted RBP18.61■□□□□ 0.57
GABPB1-203ENST00000380877 TRIM26Q12899 539 aaPredicted RBP18.56■□□□□ 0.56
GABPB1-203ENST00000380877 RB1CC1Q8TDY2 1594 aa18.34■□□□□ 0.53
GABPB1-203ENST00000380877 NACADO15069 1562 aa18.29■□□□□ 0.52
GABPB1-203ENST00000380877 ITGAEP38570 1179 aa18.25■□□□□ 0.51
GABPB1-203ENST00000380877 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.25■□□□□ 0.51
GABPB1-203ENST00000380877 HNRNPUL2Q1KMD3 747 aaKnown RBP18.25■□□□□ 0.51
GABPB1-203ENST00000380877 DCAF1Q9Y4B6 1507 aa18.24■□□□□ 0.51
GABPB1-203ENST00000380877 HRCP23327 699 aa18.23■□□□□ 0.51
GABPB1-203ENST00000380877 CSRNP3Q8WYN3 585 aa18.17■□□□□ 0.5
GABPB1-203ENST00000380877 RSF1Q96T23 1441 aaPredicted RBP18.16■□□□□ 0.5
GABPB1-203ENST00000380877 PELP1Q8IZL8 1130 aaKnown RBP18.09■□□□□ 0.49
GABPB1-203ENST00000380877 CENPBP07199 599 aaPredicted RBP18.06■□□□□ 0.48
GABPB1-203ENST00000380877 FAM50AQ14320 339 aaKnown RBP17.93■□□□□ 0.46
GABPB1-203ENST00000380877 FBLN2P98095 1184 aa17.93■□□□□ 0.46
GABPB1-203ENST00000380877 CECR2Q9BXF3 1484 aa17.92■□□□□ 0.46
GABPB1-203ENST00000380877 MYT1LQ9UL68 1186 aa17.91■□□□□ 0.46
GABPB1-203ENST00000380877 P3H3Q8IVL6 736 aa17.87■□□□□ 0.45
GABPB1-203ENST00000380877 BAZ1AQ9NRL2 1556 aaPredicted RBP17.86■□□□□ 0.45
GABPB1-203ENST00000380877 YTHDC1Q96MU7 727 aaKnown RBP17.86■□□□□ 0.45
GABPB1-203ENST00000380877 BAZ1BQ9UIG0 1483 aaKnown RBP17.82■□□□□ 0.44
GABPB1-203ENST00000380877 MYO15BQ96JP2 1530 aa17.78■□□□□ 0.44
GABPB1-203ENST00000380877 WRNQ14191 1432 aaPredicted RBP eCLIP17.7■□□□□ 0.42
GABPB1-203ENST00000380877 MROH2BQ7Z745 1585 aa17.7■□□□□ 0.42
GABPB1-203ENST00000380877 ARID3CA6NKF2 412 aa17.69■□□□□ 0.42
GABPB1-203ENST00000380877 TRIM52Q96A61 297 aa17.69■□□□□ 0.42
GABPB1-203ENST00000380877 POLR3GLQ9BT43 218 aa17.67■□□□□ 0.42
GABPB1-203ENST00000380877 EEA1Q15075 1411 aa17.64■□□□□ 0.41
GABPB1-203ENST00000380877 NEUROD1Q13562 356 aa17.62■□□□□ 0.41
GABPB1-203ENST00000380877 NEFLP07196 543 aa17.6■□□□□ 0.41
GABPB1-203ENST00000380877 DIEXFQ68CQ4 756 aaKnown RBP17.59■□□□□ 0.41
GABPB1-203ENST00000380877 CLIP1P30622 1438 aa17.56■□□□□ 0.4
GABPB1-203ENST00000380877 CDK11AQ9UQ88 783 aaPredicted RBP17.55■□□□□ 0.4
GABPB1-203ENST00000380877 GOLGA3Q08378 1498 aa17.52■□□□□ 0.4
GABPB1-203ENST00000380877 CCDC88BA6NC98 1476 aa17.51■□□□□ 0.39
GABPB1-203ENST00000380877 CNGB1Q14028 1251 aaPredicted RBP17.49■□□□□ 0.39
GABPB1-203ENST00000380877 CEP162Q5TB80 1403 aa17.49■□□□□ 0.39
GABPB1-203ENST00000380877 KIF27Q86VH2 1401 aa17.48■□□□□ 0.39
GABPB1-203ENST00000380877 ZNF777Q9ULD5 760 aaPredicted RBP17.47■□□□□ 0.39
GABPB1-203ENST00000380877 SMARCA2P51531 1590 aa17.44■□□□□ 0.38
GABPB1-203ENST00000380877 CHMP7Q8WUX9 453 aaPredicted RBP17.44■□□□□ 0.38
GABPB1-203ENST00000380877 TNIKQ9UKE5 1360 aa17.43■□□□□ 0.38
GABPB1-203ENST00000380877 WIZO95785 1651 aa17.42■□□□□ 0.38
GABPB1-203ENST00000380877 CEP164Q9UPV0 1460 aa17.41■□□□□ 0.38
GABPB1-203ENST00000380877 ZNF316A6NFI3 1004 aaPredicted RBP17.38■□□□□ 0.37
GABPB1-203ENST00000380877 ZNF326Q5BKZ1 582 aaKnown RBP17.38■□□□□ 0.37
GABPB1-203ENST00000380877 SOGA1O94964 1423 aa17.38■□□□□ 0.37
GABPB1-203ENST00000380877 TOP2AP11388 1531 aaKnown RBP17.37■□□□□ 0.37
GABPB1-203ENST00000380877 MTUS2Q5JR59 1369 aa17.35■□□□□ 0.37
GABPB1-203ENST00000380877 ABCC8Q09428 1581 aa17.33■□□□□ 0.37
GABPB1-203ENST00000380877 ATAD2BQ9ULI0 1458 aa17.3■□□□□ 0.36
GABPB1-203ENST00000380877 SMARCA4P51532 1647 aa17.29■□□□□ 0.36
GABPB1-203ENST00000380877 CUX2O14529 1486 aa17.27■□□□□ 0.35
GABPB1-203ENST00000380877 SLC4A1APQ9BWU0 796 aaKnown RBP17.27■□□□□ 0.35
GABPB1-203ENST00000380877 CHIC2Q9UKJ5 165 aa17.26■□□□□ 0.35
GABPB1-203ENST00000380877 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
GABPB1-203ENST00000380877 ERICH6Q7L0X2 663 aa17.23■□□□□ 0.35
GABPB1-203ENST00000380877 CARMIL1Q5VZK9 1371 aa17.23■□□□□ 0.35
GABPB1-203ENST00000380877 NPM1P06748 294 aaKnown RBP eCLIP17.22■□□□□ 0.35
GABPB1-203ENST00000380877 ANP32CO43423 234 aa17.21■□□□□ 0.35
GABPB1-203ENST00000380877 TONSLQ96HA7 1378 aa17.19■□□□□ 0.34
GABPB1-203ENST00000380877 CADPSQ9ULU8 1353 aa17.17■□□□□ 0.34
GABPB1-203ENST00000380877 PDS5BQ9NTI5 1447 aa17.16■□□□□ 0.34
GABPB1-203ENST00000380877 TSPY4P0CV99 314 aa17.15■□□□□ 0.34
GABPB1-203ENST00000380877 TSPY10P0CW01 314 aa17.15■□□□□ 0.34
GABPB1-203ENST00000380877 PLEKHD1A6NEE1 506 aa17.11■□□□□ 0.33
GABPB1-203ENST00000380877 RRP7BPQ9NSQ0 103 aa17.08■□□□□ 0.32
GABPB1-203ENST00000380877 TDRD9Q8NDG6 1382 aaKnown RBP17.07■□□□□ 0.32
GABPB1-203ENST00000380877 FHAD1B1AJZ9 1412 aa17.06■□□□□ 0.32
GABPB1-203ENST00000380877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.05■□□□□ 0.327e-8■■■■□ 25
GABPB1-203ENST00000380877 KCNH8Q96L42 1107 aa17.04■□□□□ 0.32
GABPB1-203ENST00000380877 VPS8Q8N3P4 1428 aa17.04■□□□□ 0.32
GABPB1-203ENST00000380877 CFDP1Q9UEE9 299 aaPredicted RBP17■□□□□ 0.31
GABPB1-203ENST00000380877 EIF4G1Q04637 1599 aaKnown RBP16.99■□□□□ 0.31
GABPB1-203ENST00000380877 DDX10Q13206 875 aaKnown RBP16.97■□□□□ 0.31
GABPB1-203ENST00000380877 CHGAP10645 457 aaKnown RBP16.97■□□□□ 0.31
GABPB1-203ENST00000380877 GTF3C3Q9Y5Q9 886 aa16.96■□□□□ 0.31
GABPB1-203ENST00000380877 CCNB3Q8WWL7 1395 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms