RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 NISCHQ9Y2I1 1504 aa28.07■■■□□ 2.08
GABPB1-201ENST00000220429 CCDC180Q9P1Z9 1646 aa24.11■■□□□ 1.45
GABPB1-201ENST00000220429 ZCCHC6Q5VYS8 1495 aaKnown RBP23.7■■□□□ 1.38
GABPB1-201ENST00000220429 PELP1Q8IZL8 1130 aaKnown RBP23.61■■□□□ 1.37
GABPB1-201ENST00000220429 SHROOM4Q9ULL8 1493 aa23.52■■□□□ 1.36
GABPB1-201ENST00000220429 DCAF8L2P0C7V8 631 aa23.14■■□□□ 1.3
GABPB1-201ENST00000220429 DCAF1Q9Y4B6 1507 aa23.11■■□□□ 1.29
GABPB1-201ENST00000220429 MYT1Q01538 1121 aa23.02■■□□□ 1.27
GABPB1-201ENST00000220429 HRCP23327 699 aa22.91■■□□□ 1.26
GABPB1-201ENST00000220429 SUPT5HO00267 1087 aaKnown RBP22.9■■□□□ 1.26
GABPB1-201ENST00000220429 MYO15BQ96JP2 1530 aa22.57■■□□□ 1.2
GABPB1-201ENST00000220429 ABCC9O60706 1549 aa22.43■■□□□ 1.18
GABPB1-201ENST00000220429 SCRIBQ14160 1630 aa22.42■■□□□ 1.18
GABPB1-201ENST00000220429 NACADO15069 1562 aa22.32■■□□□ 1.16
GABPB1-201ENST00000220429 PPARGC1BQ86YN6 1023 aaKnown RBP22.3■■□□□ 1.16
GABPB1-201ENST00000220429 CHIC1Q5VXU3 224 aa22.19■■□□□ 1.14
GABPB1-201ENST00000220429 SCAF1Q9H7N4 1312 aaKnown RBP22.17■■□□□ 1.14
GABPB1-201ENST00000220429 RSF1Q96T23 1441 aaPredicted RBP22.05■■□□□ 1.12
GABPB1-201ENST00000220429 RB1CC1Q8TDY2 1594 aa22.01■■□□□ 1.11
GABPB1-201ENST00000220429 PCGF6Q9BYE7 350 aa21.91■■□□□ 1.1
GABPB1-201ENST00000220429 TTBK1Q5TCY1 1321 aaPredicted RBP21.9■■□□□ 1.1
GABPB1-201ENST00000220429 CECR2Q9BXF3 1484 aa21.86■■□□□ 1.09
GABPB1-201ENST00000220429 MROH2BQ7Z745 1585 aa21.78■■□□□ 1.08
GABPB1-201ENST00000220429 UNC13AQ9UPW8 1703 aa21.74■■□□□ 1.07
GABPB1-201ENST00000220429 WIZO95785 1651 aa21.66■■□□□ 1.06
GABPB1-201ENST00000220429 BAZ1AQ9NRL2 1556 aaPredicted RBP21.59■■□□□ 1.05
GABPB1-201ENST00000220429 SMARCA4P51532 1647 aa21.47■■□□□ 1.03
GABPB1-201ENST00000220429 LOC105371045A0A1W2PR82 267 aa21.45■■□□□ 1.02
GABPB1-201ENST00000220429 BICRAQ9NZM4 1560 aa21.43■■□□□ 1.02
GABPB1-201ENST00000220429 TRIM41Q8WV44 630 aa21.4■■□□□ 1.02
GABPB1-201ENST00000220429 ACIN1Q9UKV3 1341 aaKnown RBP21.36■■□□□ 1.01
GABPB1-201ENST00000220429 TOP2AP11388 1531 aaKnown RBP21.34■■□□□ 1.01
GABPB1-201ENST00000220429 PABPN1Q86U42 306 aaKnown RBP eCLIP21.33■■□□□ 1
GABPB1-201ENST00000220429 BCL11AQ9H165 835 aa21.29■■□□□ 1
GABPB1-201ENST00000220429 EIF4G1Q04637 1599 aaKnown RBP21.29■■□□□ 1
GABPB1-201ENST00000220429 NEUROD1Q13562 356 aa21.22■□□□□ 0.99
GABPB1-201ENST00000220429 GTF3C3Q9Y5Q9 886 aa21.21■□□□□ 0.99
GABPB1-201ENST00000220429 SMARCA2P51531 1590 aa21.21■□□□□ 0.99
GABPB1-201ENST00000220429 ZEB1P37275 1124 aaPredicted RBP21.2■□□□□ 0.99
GABPB1-201ENST00000220429 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
GABPB1-201ENST00000220429 PRKCSHP14314 528 aaPredicted RBP21.2■□□□□ 0.98
GABPB1-201ENST00000220429 FAM9AQ8IZU1 332 aaPredicted RBP21.14■□□□□ 0.98
GABPB1-201ENST00000220429 CENPBP07199 599 aaPredicted RBP21.13■□□□□ 0.97
GABPB1-201ENST00000220429 PEG3Q9GZU2 1588 aa21.11■□□□□ 0.97
GABPB1-201ENST00000220429 ABCC8Q09428 1581 aa21.02■□□□□ 0.96
GABPB1-201ENST00000220429 TRIM26Q12899 539 aaPredicted RBP21.01■□□□□ 0.95
GABPB1-201ENST00000220429 ATAD2BQ9ULI0 1458 aa20.96■□□□□ 0.95
GABPB1-201ENST00000220429 EHMT2Q96KQ7 1210 aa20.91■□□□□ 0.94
GABPB1-201ENST00000220429 BAZ1BQ9UIG0 1483 aaKnown RBP20.87■□□□□ 0.93
GABPB1-201ENST00000220429 ERICH6Q7L0X2 663 aa20.77■□□□□ 0.92
GABPB1-201ENST00000220429 SOGA1O94964 1423 aa20.74■□□□□ 0.91
GABPB1-201ENST00000220429 WRNQ14191 1432 aaPredicted RBP eCLIP20.71■□□□□ 0.91
GABPB1-201ENST00000220429 ANP32EQ9BTT0 268 aa20.69■□□□□ 0.9
GABPB1-201ENST00000220429 SYNJ1O43426 1573 aa20.66■□□□□ 0.9
GABPB1-201ENST00000220429 RUSC2Q8N2Y8 1516 aa20.65■□□□□ 0.9
GABPB1-201ENST00000220429 EEA1Q15075 1411 aa20.64■□□□□ 0.9
GABPB1-201ENST00000220429 HMGXB3Q12766 1538 aa20.64■□□□□ 0.89
GABPB1-201ENST00000220429 NCAPD3P42695 1498 aa20.63■□□□□ 0.89
GABPB1-201ENST00000220429 APLP2Q06481 763 aa20.59■□□□□ 0.89
GABPB1-201ENST00000220429 CSRNP3Q8WYN3 585 aa20.58■□□□□ 0.89
GABPB1-201ENST00000220429 TNIKQ9UKE5 1360 aa20.52■□□□□ 0.88
GABPB1-201ENST00000220429 CEP162Q5TB80 1403 aa20.5■□□□□ 0.87
GABPB1-201ENST00000220429 DIEXFQ68CQ4 756 aaKnown RBP20.47■□□□□ 0.87
GABPB1-201ENST00000220429 TOP2BQ02880 1626 aa20.46■□□□□ 0.87
GABPB1-201ENST00000220429 GOLGA3Q08378 1498 aa20.46■□□□□ 0.87
GABPB1-201ENST00000220429 BIVM-ERCC5R4GMW8 1640 aa20.42■□□□□ 0.86
GABPB1-201ENST00000220429 UBTFP17480 764 aaKnown RBP20.41■□□□□ 0.86
GABPB1-201ENST00000220429 KIF21BO75037 1637 aa20.41■□□□□ 0.86
GABPB1-201ENST00000220429 CEP164Q9UPV0 1460 aa20.39■□□□□ 0.85
GABPB1-201ENST00000220429 CFTRP13569 1480 aa20.36■□□□□ 0.85
GABPB1-201ENST00000220429 CUX1P39880 1505 aa20.31■□□□□ 0.84
GABPB1-201ENST00000220429 PRDM2Q13029 1718 aa20.3■□□□□ 0.84
GABPB1-201ENST00000220429 CC2D2AQ9P2K1 1620 aa20.28■□□□□ 0.84
GABPB1-201ENST00000220429 RAPGEF2Q9Y4G8 1499 aa20.26■□□□□ 0.83
GABPB1-201ENST00000220429 YTHDC1Q96MU7 727 aaKnown RBP20.19■□□□□ 0.82
GABPB1-201ENST00000220429 CLIP1P30622 1438 aa20.19■□□□□ 0.82
GABPB1-201ENST00000220429 CADPSQ9ULU8 1353 aa20.17■□□□□ 0.82
GABPB1-201ENST00000220429 TSHZ2Q9NRE2 1034 aa20.15■□□□□ 0.82
GABPB1-201ENST00000220429 PRXQ9BXM0 1461 aa20.15■□□□□ 0.82
GABPB1-201ENST00000220429 ERICH3Q5RHP9 1530 aa20.14■□□□□ 0.81
GABPB1-201ENST00000220429 KIF27Q86VH2 1401 aa20.11■□□□□ 0.81
GABPB1-201ENST00000220429 VPS8Q8N3P4 1428 aa20.08■□□□□ 0.8
GABPB1-201ENST00000220429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.02■□□□□ 0.8
GABPB1-201ENST00000220429 RANGAP1P46060 587 aaPredicted RBP20.02■□□□□ 0.79
GABPB1-201ENST00000220429 CCER1Q8TC90 406 aaPredicted RBP19.99■□□□□ 0.79
GABPB1-201ENST00000220429 CLSPNQ9HAW4 1339 aa19.98■□□□□ 0.79
GABPB1-201ENST00000220429 FGD5Q6ZNL6 1462 aa19.98■□□□□ 0.79
GABPB1-201ENST00000220429 FANCD2Q9BXW9 1451 aa19.98■□□□□ 0.79
GABPB1-201ENST00000220429 SUPT16HQ9Y5B9 1047 aaKnown RBP19.97■□□□□ 0.79
GABPB1-201ENST00000220429 CUX2O14529 1486 aa19.97■□□□□ 0.79
GABPB1-201ENST00000220429 ARAP1Q96P48 1450 aa19.94■□□□□ 0.78
GABPB1-201ENST00000220429 NESP48681 1621 aa19.91■□□□□ 0.78
GABPB1-201ENST00000220429 IGF1RP08069 1367 aa19.91■□□□□ 0.78
GABPB1-201ENST00000220429 DNMBPQ6XZF7 1577 aa19.87■□□□□ 0.77
GABPB1-201ENST00000220429 ZNF316A6NFI3 1004 aaPredicted RBP19.85■□□□□ 0.77
GABPB1-201ENST00000220429 ANO8Q9HCE9 1232 aaPredicted RBP19.85■□□□□ 0.77
GABPB1-201ENST00000220429 TOPBP1Q92547 1522 aa19.83■□□□□ 0.76
GABPB1-201ENST00000220429 MIER1Q8N108 512 aa19.83■□□□□ 0.76
GABPB1-201ENST00000220429 ARHGAP35Q9NRY4 1499 aa19.82■□□□□ 0.76
GABPB1-201ENST00000220429 LAMC3Q9Y6N6 1575 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms