RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 NISCHQ9Y2I1 1504 aa49.07■■■■■ 5.45
CPNE1-204ENST00000397443 CCDC180Q9P1Z9 1646 aa42.99■■■■■ 4.47
CPNE1-204ENST00000397443 ABCC9O60706 1549 aa41.32■■■■■ 4.2
CPNE1-204ENST00000397443 ZCCHC6Q5VYS8 1495 aaKnown RBP41.1■■■■■ 4.17
CPNE1-204ENST00000397443 DCAF8L2P0C7V8 631 aa40.94■■■■■ 4.14
CPNE1-204ENST00000397443 DCAF1Q9Y4B6 1507 aa40.47■■■■■ 4.07
CPNE1-204ENST00000397443 NACADO15069 1562 aa40.19■■■■■ 4.02
CPNE1-204ENST00000397443 MYO15BQ96JP2 1530 aa40.18■■■■■ 4.02
CPNE1-204ENST00000397443 RB1CC1Q8TDY2 1594 aa40.01■■■■■ 4
CPNE1-204ENST00000397443 SHROOM4Q9ULL8 1493 aa39.85■■■■□ 3.97
CPNE1-204ENST00000397443 SCRIBQ14160 1630 aa39.61■■■■□ 3.93
CPNE1-204ENST00000397443 UNC13AQ9UPW8 1703 aa39.21■■■■□ 3.87
CPNE1-204ENST00000397443 PABPN1Q86U42 306 aaKnown RBP eCLIP38.9■■■■□ 3.821e-6■■□□□ 11.6
CPNE1-204ENST00000397443 BICRAQ9NZM4 1560 aa38.81■■■■□ 3.8
CPNE1-204ENST00000397443 CECR2Q9BXF3 1484 aa38.24■■■■□ 3.71
CPNE1-204ENST00000397443 SUPT5HO00267 1087 aaKnown RBP38.06■■■■□ 3.68
CPNE1-204ENST00000397443 MROH2BQ7Z745 1585 aa37.93■■■■□ 3.66
CPNE1-204ENST00000397443 BAZ1AQ9NRL2 1556 aaPredicted RBP37.93■■■■□ 3.66
CPNE1-204ENST00000397443 RSF1Q96T23 1441 aaPredicted RBP37.88■■■■□ 3.65
CPNE1-204ENST00000397443 SMARCA4P51532 1647 aa37.85■■■■□ 3.65
CPNE1-204ENST00000397443 EIF4G1Q04637 1599 aaKnown RBP37.71■■■■□ 3.63
CPNE1-204ENST00000397443 WIZO95785 1651 aa37.62■■■■□ 3.61
CPNE1-204ENST00000397443 ATAD2BQ9ULI0 1458 aa37.36■■■■□ 3.57
CPNE1-204ENST00000397443 PEG3Q9GZU2 1588 aa37.33■■■■□ 3.57
CPNE1-204ENST00000397443 CC2D2AQ9P2K1 1620 aa37.32■■■■□ 3.56
CPNE1-204ENST00000397443 SMARCA2P51531 1590 aa37.31■■■■□ 3.56
CPNE1-204ENST00000397443 BAZ1BQ9UIG0 1483 aaKnown RBP37.16■■■■□ 3.54
CPNE1-204ENST00000397443 TOP2AP11388 1531 aaKnown RBP37.15■■■■□ 3.54
CPNE1-204ENST00000397443 NCAPD3P42695 1498 aa37.09■■■■□ 3.53
CPNE1-204ENST00000397443 HMGXB3Q12766 1538 aa37■■■■□ 3.51
CPNE1-204ENST00000397443 DNAJC5BQ9UF47 199 aa36.94■■■■□ 3.5
CPNE1-204ENST00000397443 CCDC88BA6NC98 1476 aa36.8■■■■□ 3.48
CPNE1-204ENST00000397443 CADPSQ9ULU8 1353 aa36.16■■■■□ 3.38
CPNE1-204ENST00000397443 CFTRP13569 1480 aa36.14■■■■□ 3.38
CPNE1-204ENST00000397443 NESP48681 1621 aa36.1■■■■□ 3.37
CPNE1-204ENST00000397443 CHIC1Q5VXU3 224 aa36.04■■■■□ 3.36
CPNE1-204ENST00000397443 LAMC3Q9Y6N6 1575 aa35.94■■■■□ 3.34
CPNE1-204ENST00000397443 ABCC8Q09428 1581 aa35.91■■■■□ 3.34
CPNE1-204ENST00000397443 PRDM2Q13029 1718 aa35.91■■■■□ 3.34
CPNE1-204ENST00000397443 FANCD2Q9BXW9 1451 aa35.78■■■■□ 3.32
CPNE1-204ENST00000397443 TRIM41Q8WV44 630 aa35.76■■■■□ 3.32
CPNE1-204ENST00000397443 PDS5BQ9NTI5 1447 aa35.71■■■■□ 3.31
CPNE1-204ENST00000397443 WRNQ14191 1432 aaPredicted RBP eCLIP35.69■■■■□ 3.3
CPNE1-204ENST00000397443 KIF21AQ7Z4S6 1674 aa35.62■■■■□ 3.29
CPNE1-204ENST00000397443 CEP164Q9UPV0 1460 aa35.61■■■■□ 3.29
CPNE1-204ENST00000397443 SYNJ1O43426 1573 aa35.58■■■■□ 3.29
CPNE1-204ENST00000397443 CUX1P39880 1505 aa35.5■■■■□ 3.27
CPNE1-204ENST00000397443 ERCC6Q03468 1493 aa35.49■■■■□ 3.27
CPNE1-204ENST00000397443 TOP2BQ02880 1626 aa35.43■■■■□ 3.26
CPNE1-204ENST00000397443 BIVM-ERCC5R4GMW8 1640 aa35.38■■■■□ 3.25
CPNE1-204ENST00000397443 URB2Q14146 1524 aaKnown RBP35.36■■■■□ 3.25
CPNE1-204ENST00000397443 DNMBPQ6XZF7 1577 aa35.32■■■■□ 3.25
CPNE1-204ENST00000397443 TOPBP1Q92547 1522 aa35.32■■■■□ 3.24
CPNE1-204ENST00000397443 MRC2Q9UBG0 1479 aa35.29■■■■□ 3.24
CPNE1-204ENST00000397443 FGD5Q6ZNL6 1462 aa35.22■■■■□ 3.23
CPNE1-204ENST00000397443 FAM9AQ8IZU1 332 aaPredicted RBP35.2■■■■□ 3.22
CPNE1-204ENST00000397443 THOC2Q8NI27 1593 aaKnown RBP35.13■■■■□ 3.21
CPNE1-204ENST00000397443 POLA1P09884 1462 aaPredicted RBP35.12■■■■□ 3.21
CPNE1-204ENST00000397443 SOGA1O94964 1423 aa35.11■■■■□ 3.21
CPNE1-204ENST00000397443 WDR62O43379 1518 aa35.1■■■■□ 3.21
CPNE1-204ENST00000397443 RAD54L2Q9Y4B4 1467 aa35.04■■■■□ 3.2
CPNE1-204ENST00000397443 RUSC2Q8N2Y8 1516 aa35.02■■■■□ 3.2
CPNE1-204ENST00000397443 CUX2O14529 1486 aa34.91■■■■□ 3.18
CPNE1-204ENST00000397443 ABCA10Q8WWZ4 1543 aa34.84■■■■□ 3.17
CPNE1-204ENST00000397443 KIF27Q86VH2 1401 aa34.83■■■■□ 3.17
CPNE1-204ENST00000397443 EHMT2Q96KQ7 1210 aa34.82■■■■□ 3.16
CPNE1-204ENST00000397443 TARBP1Q13395 1621 aaKnown RBP34.81■■■■□ 3.16
CPNE1-204ENST00000397443 EEA1Q15075 1411 aa34.8■■■■□ 3.16
CPNE1-204ENST00000397443 TDRD9Q8NDG6 1382 aaKnown RBP34.77■■■■□ 3.16
CPNE1-204ENST00000397443 WDR97A6NE52 1622 aa34.77■■■■□ 3.16
CPNE1-204ENST00000397443 CSRNP3Q8WYN3 585 aa34.77■■■■□ 3.16
CPNE1-204ENST00000397443 IFT140Q96RY7 1462 aa34.76■■■■□ 3.15
CPNE1-204ENST00000397443 LOC105371045A0A1W2PR82 267 aa34.73■■■■□ 3.15
CPNE1-204ENST00000397443 ZNF608Q9ULD9 1512 aaPredicted RBP34.66■■■■□ 3.14
CPNE1-204ENST00000397443 AQRO60306 1485 aaKnown RBP eCLIP34.63■■■■□ 3.133e-7■■■■■ 27
CPNE1-204ENST00000397443 ABCA5Q8WWZ7 1642 aa34.61■■■■□ 3.13
CPNE1-204ENST00000397443 GAPVD1Q14C86 1478 aa34.6■■■■□ 3.13
CPNE1-204ENST00000397443 IGF1RP08069 1367 aa34.57■■■■□ 3.12
CPNE1-204ENST00000397443 EIF4G3O43432 1585 aaKnown RBP34.5■■■■□ 3.11
CPNE1-204ENST00000397443 PBRM1Q86U86 1689 aa34.44■■■■□ 3.1
CPNE1-204ENST00000397443 PRXQ9BXM0 1461 aa34.42■■■■□ 3.1
CPNE1-204ENST00000397443 KIF21BO75037 1637 aa34.41■■■■□ 3.1
CPNE1-204ENST00000397443 CARMIL1Q5VZK9 1371 aa34.41■■■■□ 3.1
CPNE1-204ENST00000397443 ERICH3Q5RHP9 1530 aa34.41■■■■□ 3.1
CPNE1-204ENST00000397443 RAPGEF2Q9Y4G8 1499 aa34.41■■■■□ 3.1
CPNE1-204ENST00000397443 GRIN2BQ13224 1484 aa34.4■■■■□ 3.1
CPNE1-204ENST00000397443 GOLGA3Q08378 1498 aa34.37■■■■□ 3.09
CPNE1-204ENST00000397443 UBTFP17480 764 aaKnown RBP34.36■■■■□ 3.09
CPNE1-204ENST00000397443 CUL7Q14999 1698 aa34.32■■■■□ 3.09
CPNE1-204ENST00000397443 SNAPC4Q5SXM2 1469 aa34.28■■■■□ 3.08
CPNE1-204ENST00000397443 ADAMTS12P58397 1594 aa34.21■■■■□ 3.07
CPNE1-204ENST00000397443 FHAD1B1AJZ9 1412 aa34.19■■■■□ 3.06
CPNE1-204ENST00000397443 MAGI1Q96QZ7 1491 aaPredicted RBP34.15■■■■□ 3.06
CPNE1-204ENST00000397443 TNIKQ9UKE5 1360 aa34.14■■■■□ 3.06
CPNE1-204ENST00000397443 FBLN2P98095 1184 aa34.13■■■■□ 3.05
CPNE1-204ENST00000397443 RANGAP1P46060 587 aaPredicted RBP34.1■■■■□ 3.05
CPNE1-204ENST00000397443 CHMP7Q8WUX9 453 aaPredicted RBP34.08■■■■□ 3.05
CPNE1-204ENST00000397443 SYNJ2O15056 1496 aa34.04■■■■□ 3.04
CPNE1-204ENST00000397443 GRIN2AQ12879 1464 aa33.99■■■■□ 3.03
CPNE1-204ENST00000397443 CEP162Q5TB80 1403 aa33.97■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms