RNA–Protein interactions for RNA: ENST00000558335.5

GABPB1-207, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 3

Gene GABPB1, Length 406 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-207ENST00000558335 AEBP2Q6ZN18 517 aaPredicted RBP12.24□□□□□ -0.45
GABPB1-207ENST00000558335 CHIC1Q5VXU3 224 aa11.59□□□□□ -0.55
GABPB1-207ENST00000558335 NISCHQ9Y2I1 1504 aa11.05□□□□□ -0.64
GABPB1-207ENST00000558335 SENP3Q9H4L4 574 aaPredicted RBP10.48□□□□□ -0.73
GABPB1-207ENST00000558335 PHF23Q9BUL5 403 aaPredicted RBP10.32□□□□□ -0.76
GABPB1-207ENST00000558335 MYT1Q01538 1121 aa9.81□□□□□ -0.84
GABPB1-207ENST00000558335 PELP1Q8IZL8 1130 aaKnown RBP9.78□□□□□ -0.84
GABPB1-207ENST00000558335 FOXD1Q16676 465 aa9.75□□□□□ -0.85
GABPB1-207ENST00000558335 CCDC180Q9P1Z9 1646 aa9.6□□□□□ -0.87
GABPB1-207ENST00000558335 TTBK1Q5TCY1 1321 aaPredicted RBP9.51□□□□□ -0.89
GABPB1-207ENST00000558335 ZCCHC6Q5VYS8 1495 aaKnown RBP9.37□□□□□ -0.91
GABPB1-207ENST00000558335 DCAF1Q9Y4B6 1507 aa9.26□□□□□ -0.93
GABPB1-207ENST00000558335 PLPPR3Q6T4P5 718 aa9.24□□□□□ -0.93
GABPB1-207ENST00000558335 MSH5O43196 834 aa9.18□□□□□ -0.94
GABPB1-207ENST00000558335 SHROOM4Q9ULL8 1493 aa9.1□□□□□ -0.95
GABPB1-207ENST00000558335 PIAS4Q8N2W9 510 aaPredicted RBP9.1□□□□□ -0.95
GABPB1-207ENST00000558335 PPP6R1Q9UPN7 881 aa9.07□□□□□ -0.96
GABPB1-207ENST00000558335 MYO15BQ96JP2 1530 aa9.04□□□□□ -0.96
GABPB1-207ENST00000558335 SUPT5HO00267 1087 aaKnown RBP9.03□□□□□ -0.96
GABPB1-207ENST00000558335 ADRA2BP18089 450 aa9.03□□□□□ -0.96
GABPB1-207ENST00000558335 POTEDQ86YR6 584 aa9.03□□□□□ -0.96
GABPB1-207ENST00000558335 ERICH6Q7L0X2 663 aa8.93□□□□□ -0.98
GABPB1-207ENST00000558335 DCAF8L2P0C7V8 631 aa8.89□□□□□ -0.99
GABPB1-207ENST00000558335 ABCC9O60706 1549 aa8.86□□□□□ -0.99
GABPB1-207ENST00000558335 SLC24A1O60721 1099 aa8.82□□□□□ -1
GABPB1-207ENST00000558335 NACADO15069 1562 aa8.82□□□□□ -1
GABPB1-207ENST00000558335 HRCP23327 699 aa8.75□□□□□ -1.01
GABPB1-207ENST00000558335 RB1CC1Q8TDY2 1594 aa8.73□□□□□ -1.01
GABPB1-207ENST00000558335 SCRIBQ14160 1630 aa8.69□□□□□ -1.02
GABPB1-207ENST00000558335 APLP2Q06481 763 aa8.68□□□□□ -1.02
GABPB1-207ENST00000558335 ZEB1P37275 1124 aaPredicted RBP8.67□□□□□ -1.02
GABPB1-207ENST00000558335 RSF1Q96T23 1441 aaPredicted RBP8.67□□□□□ -1.02
GABPB1-207ENST00000558335 TRIM26Q12899 539 aaPredicted RBP8.64□□□□□ -1.03
GABPB1-207ENST00000558335 PCGF6Q9BYE7 350 aa8.6□□□□□ -1.03
GABPB1-207ENST00000558335 TRIM41Q8WV44 630 aa8.58□□□□□ -1.04
GABPB1-207ENST00000558335 BAZ1AQ9NRL2 1556 aaPredicted RBP8.57□□□□□ -1.04
GABPB1-207ENST00000558335 PRKCSHP14314 528 aaPredicted RBP8.55□□□□□ -1.04
GABPB1-207ENST00000558335 DAXXQ9UER7 740 aaPredicted RBP8.52□□□□□ -1.05
GABPB1-207ENST00000558335 EEA1Q15075 1411 aa8.46□□□□□ -1.05
GABPB1-207ENST00000558335 TOP2AP11388 1531 aaKnown RBP8.46□□□□□ -1.05
GABPB1-207ENST00000558335 MROH2BQ7Z745 1585 aa8.46□□□□□ -1.06
GABPB1-207ENST00000558335 LOC105371045A0A1W2PR82 267 aa8.45□□□□□ -1.06
GABPB1-207ENST00000558335 WIZO95785 1651 aa8.43□□□□□ -1.06
GABPB1-207ENST00000558335 SMARCA4P51532 1647 aa8.43□□□□□ -1.06
GABPB1-207ENST00000558335 CECR2Q9BXF3 1484 aa8.41□□□□□ -1.06
GABPB1-207ENST00000558335 EIF4G1Q04637 1599 aaKnown RBP8.4□□□□□ -1.06
GABPB1-207ENST00000558335 CENPBP07199 599 aaPredicted RBP8.37□□□□□ -1.07
GABPB1-207ENST00000558335 BCL11AQ9H165 835 aa8.37□□□□□ -1.07
GABPB1-207ENST00000558335 PEG3Q9GZU2 1588 aa8.36□□□□□ -1.07
GABPB1-207ENST00000558335 UNC13AQ9UPW8 1703 aa8.36□□□□□ -1.07
GABPB1-207ENST00000558335 WRNQ14191 1432 aaPredicted RBP eCLIP8.36□□□□□ -1.07
GABPB1-207ENST00000558335 SMARCA2P51531 1590 aa8.34□□□□□ -1.07
GABPB1-207ENST00000558335 MAPK8IP2Q13387 824 aaPredicted RBP8.3□□□□□ -1.08
GABPB1-207ENST00000558335 DMRT2Q9Y5R5 561 aa8.3□□□□□ -1.08
GABPB1-207ENST00000558335 TNIKQ9UKE5 1360 aa8.3□□□□□ -1.08
GABPB1-207ENST00000558335 CCDC88BA6NC98 1476 aa8.3□□□□□ -1.08
GABPB1-207ENST00000558335 SCAF1Q9H7N4 1312 aaKnown RBP8.29□□□□□ -1.08
GABPB1-207ENST00000558335 FAM9AQ8IZU1 332 aaPredicted RBP8.27□□□□□ -1.09
GABPB1-207ENST00000558335 GOLGA3Q08378 1498 aa8.26□□□□□ -1.09
GABPB1-207ENST00000558335 KIF21BO75037 1637 aa8.25□□□□□ -1.09
GABPB1-207ENST00000558335 PPARGC1BQ86YN6 1023 aaKnown RBP8.24□□□□□ -1.09
GABPB1-207ENST00000558335 BAZ1BQ9UIG0 1483 aaKnown RBP8.24□□□□□ -1.09
GABPB1-207ENST00000558335 CEP164Q9UPV0 1460 aa8.24□□□□□ -1.09
GABPB1-207ENST00000558335 CEP162Q5TB80 1403 aa8.23□□□□□ -1.09
GABPB1-207ENST00000558335 CSRNP3Q8WYN3 585 aa8.23□□□□□ -1.09
GABPB1-207ENST00000558335 BICRAQ9NZM4 1560 aa8.2□□□□□ -1.1
GABPB1-207ENST00000558335 CCER1Q8TC90 406 aaPredicted RBP8.2□□□□□ -1.1
GABPB1-207ENST00000558335 ABCC8Q09428 1581 aa8.19□□□□□ -1.1
GABPB1-207ENST00000558335 ATAD2BQ9ULI0 1458 aa8.15□□□□□ -1.1
GABPB1-207ENST00000558335 EIF5BO60841 1220 aaKnown RBP8.15□□□□□ -1.1
GABPB1-207ENST00000558335 UBTFP17480 764 aaKnown RBP8.15□□□□□ -1.1
GABPB1-207ENST00000558335 ERICH3Q5RHP9 1530 aa8.14□□□□□ -1.11
GABPB1-207ENST00000558335 HMGXB3Q12766 1538 aa8.13□□□□□ -1.11
GABPB1-207ENST00000558335 TOP2BQ02880 1626 aa8.13□□□□□ -1.11
GABPB1-207ENST00000558335 BIVM-ERCC5R4GMW8 1640 aa8.13□□□□□ -1.11
GABPB1-207ENST00000558335 CLSPNQ9HAW4 1339 aa8.12□□□□□ -1.11
GABPB1-207ENST00000558335 SOGA1O94964 1423 aa8.12□□□□□ -1.11
GABPB1-207ENST00000558335 VPS8Q8N3P4 1428 aa8.11□□□□□ -1.11
GABPB1-207ENST00000558335 CLIP1P30622 1438 aa8.1□□□□□ -1.11
GABPB1-207ENST00000558335 ACIN1Q9UKV3 1341 aaKnown RBP8.09□□□□□ -1.11
GABPB1-207ENST00000558335 SYNJ1O43426 1573 aa8.09□□□□□ -1.11
GABPB1-207ENST00000558335 PRDM2Q13029 1718 aa8.09□□□□□ -1.11
GABPB1-207ENST00000558335 PPP4R3CPQ6ZMV5 832 aa8.07□□□□□ -1.12
GABPB1-207ENST00000558335 ANP32EQ9BTT0 268 aa8.07□□□□□ -1.12
GABPB1-207ENST00000558335 NCAPD3P42695 1498 aa8.06□□□□□ -1.12
GABPB1-207ENST00000558335 DIEXFQ68CQ4 756 aaKnown RBP8.06□□□□□ -1.12
GABPB1-207ENST00000558335 ZNF316A6NFI3 1004 aaPredicted RBP8.04□□□□□ -1.12
GABPB1-207ENST00000558335 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.04□□□□□ -1.12
GABPB1-207ENST00000558335 EHMT2Q96KQ7 1210 aa8.04□□□□□ -1.12
GABPB1-207ENST00000558335 KIF27Q86VH2 1401 aa8.03□□□□□ -1.12
GABPB1-207ENST00000558335 MYT1LQ9UL68 1186 aa8.01□□□□□ -1.13
GABPB1-207ENST00000558335 PRXQ9BXM0 1461 aa8□□□□□ -1.13
GABPB1-207ENST00000558335 RUSC2Q8N2Y8 1516 aa8□□□□□ -1.13
GABPB1-207ENST00000558335 PABPN1Q86U42 306 aaKnown RBP eCLIP8□□□□□ -1.13
GABPB1-207ENST00000558335 MAP3K1Q13233 1512 aa7.99□□□□□ -1.13
GABPB1-207ENST00000558335 HOXD11P31277 338 aaPredicted RBP7.98□□□□□ -1.13
GABPB1-207ENST00000558335 UBE2Q2Q8WVN8 375 aa7.98□□□□□ -1.13
GABPB1-207ENST00000558335 RAPGEF2Q9Y4G8 1499 aa7.98□□□□□ -1.13
GABPB1-207ENST00000558335 CFTRP13569 1480 aa7.97□□□□□ -1.13
GABPB1-207ENST00000558335 RANGAP1P46060 587 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms