RNA–Protein interactions for RNA: ENST00000359031.8

GABPB1-202, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 5 BASIC

Gene GABPB1, Length 1,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-202ENST00000359031 NISCHQ9Y2I1 1504 aa32.59■■■□□ 2.81
GABPB1-202ENST00000359031 ABCC9O60706 1549 aa28.31■■■□□ 2.12
GABPB1-202ENST00000359031 CCDC180Q9P1Z9 1646 aa28.27■■■□□ 2.12
GABPB1-202ENST00000359031 ZCCHC6Q5VYS8 1495 aaKnown RBP27.52■■■□□ 2
GABPB1-202ENST00000359031 DCAF1Q9Y4B6 1507 aa26.99■■□□□ 1.91
GABPB1-202ENST00000359031 SHROOM4Q9ULL8 1493 aa26.88■■□□□ 1.89
GABPB1-202ENST00000359031 DNAJC5BQ9UF47 199 aa26.8■■□□□ 1.88
GABPB1-202ENST00000359031 RB1CC1Q8TDY2 1594 aa26.76■■□□□ 1.87
GABPB1-202ENST00000359031 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
GABPB1-202ENST00000359031 MYO15BQ96JP2 1530 aa26.46■■□□□ 1.83
GABPB1-202ENST00000359031 NACADO15069 1562 aa26.45■■□□□ 1.82
GABPB1-202ENST00000359031 PABPN1Q86U42 306 aaKnown RBP eCLIP26.3■■□□□ 1.8
GABPB1-202ENST00000359031 SUPT5HO00267 1087 aaKnown RBP26.08■■□□□ 1.77
GABPB1-202ENST00000359031 UNC13AQ9UPW8 1703 aa26.07■■□□□ 1.76
GABPB1-202ENST00000359031 SCRIBQ14160 1630 aa26.02■■□□□ 1.76
GABPB1-202ENST00000359031 BICRAQ9NZM4 1560 aa25.92■■□□□ 1.74
GABPB1-202ENST00000359031 CECR2Q9BXF3 1484 aa25.54■■□□□ 1.68
GABPB1-202ENST00000359031 CC2D2AQ9P2K1 1620 aa25.52■■□□□ 1.68
GABPB1-202ENST00000359031 RSF1Q96T23 1441 aaPredicted RBP25.45■■□□□ 1.66
GABPB1-202ENST00000359031 EIF4G1Q04637 1599 aaKnown RBP25.37■■□□□ 1.65
GABPB1-202ENST00000359031 CHIC1Q5VXU3 224 aa25.27■■□□□ 1.64
GABPB1-202ENST00000359031 MROH2BQ7Z745 1585 aa25.19■■□□□ 1.62
GABPB1-202ENST00000359031 BAZ1AQ9NRL2 1556 aaPredicted RBP25.15■■□□□ 1.62
GABPB1-202ENST00000359031 WIZO95785 1651 aa25.05■■□□□ 1.6
GABPB1-202ENST00000359031 SMARCA4P51532 1647 aa24.99■■□□□ 1.59
GABPB1-202ENST00000359031 DNAJC5Q9H3Z4 198 aa24.92■■□□□ 1.58
GABPB1-202ENST00000359031 TOP2AP11388 1531 aaKnown RBP24.82■■□□□ 1.56
GABPB1-202ENST00000359031 PEG3Q9GZU2 1588 aa24.66■■□□□ 1.54
GABPB1-202ENST00000359031 SMARCA2P51531 1590 aa24.59■■□□□ 1.53
GABPB1-202ENST00000359031 CUX2O14529 1486 aa24.54■■□□□ 1.52
GABPB1-202ENST00000359031 ERCC6Q03468 1493 aa24.52■■□□□ 1.52
GABPB1-202ENST00000359031 CCDC88BA6NC98 1476 aa24.5■■□□□ 1.51
GABPB1-202ENST00000359031 TRIM41Q8WV44 630 aa24.5■■□□□ 1.51
GABPB1-202ENST00000359031 NCAPD3P42695 1498 aa24.4■■□□□ 1.5
GABPB1-202ENST00000359031 ATAD2BQ9ULI0 1458 aa24.38■■□□□ 1.49
GABPB1-202ENST00000359031 BAZ1BQ9UIG0 1483 aaKnown RBP24.29■■□□□ 1.48
GABPB1-202ENST00000359031 LOC105371045A0A1W2PR82 267 aa24.28■■□□□ 1.48
GABPB1-202ENST00000359031 HMGXB3Q12766 1538 aa24.21■■□□□ 1.47
GABPB1-202ENST00000359031 ABCC8Q09428 1581 aa24.19■■□□□ 1.46
GABPB1-202ENST00000359031 NESP48681 1621 aa24.18■■□□□ 1.46
GABPB1-202ENST00000359031 FAM9AQ8IZU1 332 aaPredicted RBP24.04■■□□□ 1.44
GABPB1-202ENST00000359031 THOC2Q8NI27 1593 aaKnown RBP24■■□□□ 1.43
GABPB1-202ENST00000359031 WRNQ14191 1432 aaPredicted RBP eCLIP23.95■■□□□ 1.43
GABPB1-202ENST00000359031 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.42
GABPB1-202ENST00000359031 EEA1Q15075 1411 aa23.93■■□□□ 1.42
GABPB1-202ENST00000359031 SYNJ1O43426 1573 aa23.89■■□□□ 1.41
GABPB1-202ENST00000359031 PDS5BQ9NTI5 1447 aa23.85■■□□□ 1.41
GABPB1-202ENST00000359031 KIF21AQ7Z4S6 1674 aa23.85■■□□□ 1.41
GABPB1-202ENST00000359031 SOGA1O94964 1423 aa23.79■■□□□ 1.4
GABPB1-202ENST00000359031 PRDM2Q13029 1718 aa23.77■■□□□ 1.4
GABPB1-202ENST00000359031 TOP2BQ02880 1626 aa23.76■■□□□ 1.39
GABPB1-202ENST00000359031 BIVM-ERCC5R4GMW8 1640 aa23.76■■□□□ 1.39
GABPB1-202ENST00000359031 PCGF6Q9BYE7 350 aa23.75■■□□□ 1.39
GABPB1-202ENST00000359031 CFTRP13569 1480 aa23.7■■□□□ 1.38
GABPB1-202ENST00000359031 RUSC2Q8N2Y8 1516 aa23.67■■□□□ 1.38
GABPB1-202ENST00000359031 CADPSQ9ULU8 1353 aa23.67■■□□□ 1.38
GABPB1-202ENST00000359031 MRC2Q9UBG0 1479 aa23.66■■□□□ 1.38
GABPB1-202ENST00000359031 TRIM26Q12899 539 aaPredicted RBP23.66■■□□□ 1.38
GABPB1-202ENST00000359031 EHMT2Q96KQ7 1210 aa23.66■■□□□ 1.38
GABPB1-202ENST00000359031 CSRNP3Q8WYN3 585 aa23.64■■□□□ 1.38
GABPB1-202ENST00000359031 KIF21BO75037 1637 aa23.64■■□□□ 1.37
GABPB1-202ENST00000359031 GOLGA3Q08378 1498 aa23.62■■□□□ 1.37
GABPB1-202ENST00000359031 TNIKQ9UKE5 1360 aa23.61■■□□□ 1.37
GABPB1-202ENST00000359031 WDR62O43379 1518 aa23.59■■□□□ 1.37
GABPB1-202ENST00000359031 CEP164Q9UPV0 1460 aa23.56■■□□□ 1.36
GABPB1-202ENST00000359031 HRCP23327 699 aa23.55■■□□□ 1.36
GABPB1-202ENST00000359031 CEP162Q5TB80 1403 aa23.54■■□□□ 1.36
GABPB1-202ENST00000359031 CUX1P39880 1505 aa23.54■■□□□ 1.36
GABPB1-202ENST00000359031 FANCD2Q9BXW9 1451 aa23.43■■□□□ 1.34
GABPB1-202ENST00000359031 UBTFP17480 764 aaKnown RBP23.37■■□□□ 1.33
GABPB1-202ENST00000359031 ERICH3Q5RHP9 1530 aa23.37■■□□□ 1.33
GABPB1-202ENST00000359031 OSCARQ8IYS5 282 aa23.37■■□□□ 1.33
GABPB1-202ENST00000359031 RAPGEF2Q9Y4G8 1499 aa23.32■■□□□ 1.32
GABPB1-202ENST00000359031 KIF27Q86VH2 1401 aa23.3■■□□□ 1.32
GABPB1-202ENST00000359031 PRXQ9BXM0 1461 aa23.29■■□□□ 1.32
GABPB1-202ENST00000359031 URB2Q14146 1524 aaKnown RBP23.24■■□□□ 1.31
GABPB1-202ENST00000359031 CLIP1P30622 1438 aa23.22■■□□□ 1.31
GABPB1-202ENST00000359031 DNMBPQ6XZF7 1577 aa23.2■■□□□ 1.3
GABPB1-202ENST00000359031 FGD5Q6ZNL6 1462 aa23.19■■□□□ 1.3
GABPB1-202ENST00000359031 VPS8Q8N3P4 1428 aa23.12■■□□□ 1.29
GABPB1-202ENST00000359031 RIMBP3CA6NJZ7 1639 aa23.09■■□□□ 1.29
GABPB1-202ENST00000359031 RIMBP3BA6NNM3 1639 aa23.09■■□□□ 1.29
GABPB1-202ENST00000359031 RIMBP3Q9UFD9 1639 aa23.09■■□□□ 1.29
GABPB1-202ENST00000359031 PPARGC1BQ86YN6 1023 aaKnown RBP23.08■■□□□ 1.29
GABPB1-202ENST00000359031 TOPBP1Q92547 1522 aa23.07■■□□□ 1.28
GABPB1-202ENST00000359031 IFT140Q96RY7 1462 aa23.03■■□□□ 1.28
GABPB1-202ENST00000359031 ZEB1P37275 1124 aaPredicted RBP23.03■■□□□ 1.28
GABPB1-202ENST00000359031 ZNF608Q9ULD9 1512 aaPredicted RBP23.02■■□□□ 1.28
GABPB1-202ENST00000359031 ABCA10Q8WWZ4 1543 aa23.01■■□□□ 1.27
GABPB1-202ENST00000359031 POLA1P09884 1462 aaPredicted RBP22.99■■□□□ 1.27
GABPB1-202ENST00000359031 ARHGEF11O15085 1522 aa22.99■■□□□ 1.27
GABPB1-202ENST00000359031 IGF1RP08069 1367 aa22.98■■□□□ 1.27
GABPB1-202ENST00000359031 WDR97A6NE52 1622 aa22.97■■□□□ 1.27
GABPB1-202ENST00000359031 ARAP1Q96P48 1450 aa22.96■■□□□ 1.27
GABPB1-202ENST00000359031 CUL7Q14999 1698 aa22.92■■□□□ 1.26
GABPB1-202ENST00000359031 EIF4G3O43432 1585 aaKnown RBP22.9■■□□□ 1.26
GABPB1-202ENST00000359031 CARMIL1Q5VZK9 1371 aa22.9■■□□□ 1.26
GABPB1-202ENST00000359031 RAD54L2Q9Y4B4 1467 aa22.89■■□□□ 1.25
GABPB1-202ENST00000359031 CYB5RLQ6IPT4 315 aa22.87■■□□□ 1.25
GABPB1-202ENST00000359031 ARHGAP35Q9NRY4 1499 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms