Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ABCA4P78363 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ABCA4P78363 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA4P78363 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.7■□□□□ 0.9
ABCA4P78363 KRT16P3-201ENST00000439127 1283 ntBASIC20.7■□□□□ 0.9
ABCA4P78363 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.7■□□□□ 0.9
ABCA4P78363 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ABCA4P78363 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA4P78363 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA4P78363 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ABCA4P78363 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA4P78363 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ABCA4P78363 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.69■□□□□ 0.9
ABCA4P78363 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.68■□□□□ 0.9
ABCA4P78363 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
ABCA4P78363 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
ABCA4P78363 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.68■□□□□ 0.9
ABCA4P78363 MIR4281-201ENST00000580852 62 ntBASIC20.68■□□□□ 0.9
ABCA4P78363 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA4P78363 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA4P78363 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.68■□□□□ 0.9
ABCA4P78363 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA4P78363 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
ABCA4P78363 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA4P78363 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.67■□□□□ 0.9
ABCA4P78363 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ABCA4P78363 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ABCA4P78363 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.66■□□□□ 0.9
ABCA4P78363 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.66■□□□□ 0.9
ABCA4P78363 AC092028.1-203ENST00000608262 953 ntBASIC20.66■□□□□ 0.9
ABCA4P78363 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
ABCA4P78363 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
ABCA4P78363 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCA4P78363 AC120024.1-201ENST00000562672 995 ntBASIC20.65■□□□□ 0.9
ABCA4P78363 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCA4P78363 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCA4P78363 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCA4P78363 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ABCA4P78363 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ABCA4P78363 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.65■□□□□ 0.9
ABCA4P78363 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.64■□□□□ 0.89
ABCA4P78363 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.64■□□□□ 0.89
ABCA4P78363 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.64■□□□□ 0.89
ABCA4P78363 MIR3621-201ENST00000580529 85 ntBASIC20.64■□□□□ 0.89
ABCA4P78363 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ABCA4P78363 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ABCA4P78363 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ABCA4P78363 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ABCA4P78363 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ABCA4P78363 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.63■□□□□ 0.89
ABCA4P78363 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ABCA4P78363 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ABCA4P78363 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ABCA4P78363 AC021242.3-201ENST00000607598 1377 ntBASIC20.63■□□□□ 0.89
ABCA4P78363 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.62■□□□□ 0.89
ABCA4P78363 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.62■□□□□ 0.89
ABCA4P78363 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.62■□□□□ 0.89
ABCA4P78363 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.62■□□□□ 0.89
ABCA4P78363 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.62■□□□□ 0.89
ABCA4P78363 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.62■□□□□ 0.89
ABCA4P78363 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.62■□□□□ 0.89
ABCA4P78363 AC110285.6-201ENST00000617652 491 ntBASIC20.62■□□□□ 0.89
ABCA4P78363 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ABCA4P78363 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.61■□□□□ 0.89
ABCA4P78363 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
ABCA4P78363 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.61■□□□□ 0.89
ABCA4P78363 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ABCA4P78363 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ABCA4P78363 AL139246.5-201ENST00000606645 996 ntBASIC20.61■□□□□ 0.89
ABCA4P78363 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.61■□□□□ 0.89
ABCA4P78363 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ABCA4P78363 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ABCA4P78363 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
ABCA4P78363 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.6■□□□□ 0.89
ABCA4P78363 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ABCA4P78363 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ABCA4P78363 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ABCA4P78363 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.6■□□□□ 0.89
ABCA4P78363 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ABCA4P78363 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
ABCA4P78363 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ABCA4P78363 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ABCA4P78363 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ABCA4P78363 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ABCA4P78363 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ABCA4P78363 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.58■□□□□ 0.89
ABCA4P78363 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
ABCA4P78363 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ABCA4P78363 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.58■□□□□ 0.88
ABCA4P78363 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.58■□□□□ 0.88
ABCA4P78363 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ABCA4P78363 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ABCA4P78363 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
ABCA4P78363 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.57■□□□□ 0.88
ABCA4P78363 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ABCA4P78363 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.57■□□□□ 0.88
ABCA4P78363 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
ABCA4P78363 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.57■□□□□ 0.88
ABCA4P78363 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ABCA4P78363 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms