Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC018358.1-201ENST00000631079 1402 ntBASIC23.56■■□□□ 1.36
PTCHD1Q96NR3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.56■■□□□ 1.36
PTCHD1Q96NR3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PTCHD1Q96NR3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PTCHD1Q96NR3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PTCHD1Q96NR3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PTCHD1Q96NR3 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PTCHD1Q96NR3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
PTCHD1Q96NR3 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
PTCHD1Q96NR3 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PTCHD1Q96NR3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
PTCHD1Q96NR3 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
PTCHD1Q96NR3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.52■■□□□ 1.36
PTCHD1Q96NR3 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD1Q96NR3 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD1Q96NR3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD1Q96NR3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD1Q96NR3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD1Q96NR3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PTCHD1Q96NR3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PTCHD1Q96NR3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.51■■□□□ 1.35
PTCHD1Q96NR3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.51■■□□□ 1.35
PTCHD1Q96NR3 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PTCHD1Q96NR3 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
PTCHD1Q96NR3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
PTCHD1Q96NR3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PTCHD1Q96NR3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.5■■□□□ 1.35
PTCHD1Q96NR3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PTCHD1Q96NR3 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.5■■□□□ 1.35
PTCHD1Q96NR3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD1Q96NR3 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD1Q96NR3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.49■■□□□ 1.35
PTCHD1Q96NR3 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD1Q96NR3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.49■■□□□ 1.35
PTCHD1Q96NR3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD1Q96NR3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.49■■□□□ 1.35
PTCHD1Q96NR3 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
PTCHD1Q96NR3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
PTCHD1Q96NR3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
PTCHD1Q96NR3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PTCHD1Q96NR3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
PTCHD1Q96NR3 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
PTCHD1Q96NR3 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.48■■□□□ 1.35
PTCHD1Q96NR3 AC022413.1-201ENST00000624602 984 ntBASIC23.48■■□□□ 1.35
PTCHD1Q96NR3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PTCHD1Q96NR3 GPX1-201ENST00000419349 1106 ntBASIC23.47■■□□□ 1.35
PTCHD1Q96NR3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
PTCHD1Q96NR3 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
PTCHD1Q96NR3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PTCHD1Q96NR3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
PTCHD1Q96NR3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PTCHD1Q96NR3 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.46■■□□□ 1.35
PTCHD1Q96NR3 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PTCHD1Q96NR3 HSD17B1P1-201ENST00000590052 955 ntBASIC23.46■■□□□ 1.35
PTCHD1Q96NR3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
PTCHD1Q96NR3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
PTCHD1Q96NR3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PTCHD1Q96NR3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PTCHD1Q96NR3 AC126177.7-201ENST00000547904 679 ntBASIC23.45■■□□□ 1.34
PTCHD1Q96NR3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
PTCHD1Q96NR3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
PTCHD1Q96NR3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.44■■□□□ 1.34
PTCHD1Q96NR3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.44■■□□□ 1.34
PTCHD1Q96NR3 LINC01003-201ENST00000564834 1764 ntBASIC23.44■■□□□ 1.34
PTCHD1Q96NR3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
PTCHD1Q96NR3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.43■■□□□ 1.34
PTCHD1Q96NR3 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
PTCHD1Q96NR3 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.42■■□□□ 1.34
PTCHD1Q96NR3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
PTCHD1Q96NR3 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.42■■□□□ 1.34
PTCHD1Q96NR3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
PTCHD1Q96NR3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD1Q96NR3 AC060814.1-201ENST00000554326 538 ntBASIC23.4■■□□□ 1.34
PTCHD1Q96NR3 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.4■■□□□ 1.34
PTCHD1Q96NR3 AL359258.2-201ENST00000564063 1566 ntBASIC23.4■■□□□ 1.34
PTCHD1Q96NR3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
PTCHD1Q96NR3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
PTCHD1Q96NR3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.39■■□□□ 1.34
PTCHD1Q96NR3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.39■■□□□ 1.33
PTCHD1Q96NR3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.39■■□□□ 1.33
PTCHD1Q96NR3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PTCHD1Q96NR3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PTCHD1Q96NR3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PTCHD1Q96NR3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PTCHD1Q96NR3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
PTCHD1Q96NR3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
PTCHD1Q96NR3 BX255925.1-201ENST00000566954 1854 ntBASIC23.37■■□□□ 1.33
PTCHD1Q96NR3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PTCHD1Q96NR3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms