Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PDLIM4P50479 AC126177.7-201ENST00000547904 679 ntBASIC21.33■■□□□ 1.01
PDLIM4P50479 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
PDLIM4P50479 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.33■■□□□ 1.01
PDLIM4P50479 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.33■■□□□ 1
PDLIM4P50479 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PDLIM4P50479 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDLIM4P50479 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PDLIM4P50479 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.32■■□□□ 1
PDLIM4P50479 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.31■■□□□ 1
PDLIM4P50479 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PDLIM4P50479 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.31■■□□□ 1
PDLIM4P50479 AP004833.2-201ENST00000532228 1454 ntBASIC21.31■■□□□ 1
PDLIM4P50479 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PDLIM4P50479 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PDLIM4P50479 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PDLIM4P50479 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
PDLIM4P50479 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.3■■□□□ 1
PDLIM4P50479 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
PDLIM4P50479 ABCB10P1-201ENST00000614297 2181 ntBASIC21.3■■□□□ 1
PDLIM4P50479 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDLIM4P50479 ST7-AS1-201ENST00000456775 1889 ntBASIC21.29■■□□□ 1
PDLIM4P50479 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDLIM4P50479 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDLIM4P50479 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
PDLIM4P50479 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PDLIM4P50479 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
PDLIM4P50479 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PDLIM4P50479 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PDLIM4P50479 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PDLIM4P50479 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PDLIM4P50479 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.27■■□□□ 1
PDLIM4P50479 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
PDLIM4P50479 AC012354.3-201ENST00000623734 483 ntBASIC21.27■■□□□ 1
PDLIM4P50479 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.27■■□□□ 1
PDLIM4P50479 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PDLIM4P50479 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
PDLIM4P50479 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PDLIM4P50479 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PDLIM4P50479 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
PDLIM4P50479 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PDLIM4P50479 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PDLIM4P50479 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.25■□□□□ 0.99
PDLIM4P50479 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.25■□□□□ 0.99
PDLIM4P50479 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PDLIM4P50479 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.24■□□□□ 0.99
PDLIM4P50479 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PDLIM4P50479 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.24■□□□□ 0.99
PDLIM4P50479 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PDLIM4P50479 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.23■□□□□ 0.99
PDLIM4P50479 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PDLIM4P50479 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.23■□□□□ 0.99
PDLIM4P50479 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.23■□□□□ 0.99
PDLIM4P50479 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PDLIM4P50479 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PDLIM4P50479 ECEL1P2-201ENST00000461596 1295 ntBASIC21.22■□□□□ 0.99
PDLIM4P50479 AC092296.2-201ENST00000589470 999 ntBASIC21.22■□□□□ 0.99
PDLIM4P50479 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.21■□□□□ 0.99
PDLIM4P50479 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.21■□□□□ 0.99
PDLIM4P50479 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PDLIM4P50479 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PDLIM4P50479 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PDLIM4P50479 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.19■□□□□ 0.98
PDLIM4P50479 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PDLIM4P50479 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PDLIM4P50479 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDLIM4P50479 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM4P50479 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PDLIM4P50479 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDLIM4P50479 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
PDLIM4P50479 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDLIM4P50479 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.17■□□□□ 0.98
PDLIM4P50479 U85056.1-201ENST00000616429 682 ntBASIC21.17■□□□□ 0.98
PDLIM4P50479 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
PDLIM4P50479 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PDLIM4P50479 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PDLIM4P50479 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM4P50479 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM4P50479 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM4P50479 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM4P50479 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
PDLIM4P50479 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM4P50479 AC100797.4-201ENST00000631653 1827 ntBASIC21.15■□□□□ 0.98
PDLIM4P50479 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM4P50479 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM4P50479 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.15■□□□□ 0.98
PDLIM4P50479 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM4P50479 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.15■□□□□ 0.98
PDLIM4P50479 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM4P50479 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.14■□□□□ 0.98
PDLIM4P50479 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.14■□□□□ 0.98
PDLIM4P50479 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PDLIM4P50479 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.14■□□□□ 0.97
PDLIM4P50479 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PDLIM4P50479 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PDLIM4P50479 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PDLIM4P50479 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.14■□□□□ 0.97
PDLIM4P50479 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PDLIM4P50479 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
PDLIM4P50479 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms